Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1330 134 2e-26
seq801 134 2e-26
seq322 123 3e-23
seq202 123 3e-23
seq122 93.3 5e-14
>seq1330
Length=73179
Score = 134 bits (148), Expect = 2e-26
Identities = 378/571 (66%), Gaps = 21/571 (4%)
Strand=Plus/Minus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || || |||||||| |||||||| |||||||| | || |||||| ||||||
Sbjct 27048 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 26989
Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841
|||| || ||||||| ||| | || ||| | | | |||| | ||
Sbjct 26988 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 26934
Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901
|| ||||||| ||| |||| |||||| |||| ||| |||||| || | ||
Sbjct 26933 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 26874
Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961
||| || |||||||| | | |||| || |||| || ||||| || | ||| |||||
Sbjct 26873 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 26814
Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018
| | || ||| || | | || | || | |||| | | |||| |
Sbjct 26813 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 26757
Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078
|| || ||| | |||||||| || ||||| || || || ||||| ||| || |||
Sbjct 26756 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 26697
Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138
|| | ||| ||||| || | ||| || ||||| || || || |||||||| ||||||
Sbjct 26696 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 26637
Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198
||||| || || || || | || ||||| || || || ||| || | |||
Sbjct 26636 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 26580
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258
||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||||
Sbjct 26579 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 26520
Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288
| ||| || | ||| || |||||||||
Sbjct 26519 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 26490
Score = 134 bits (148), Expect = 2e-26
Identities = 378/571 (66%), Gaps = 21/571 (4%)
Strand=Plus/Plus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || || |||||||| |||||||| |||||||| | || |||||| ||||||
Sbjct 46132 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 46191
Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841
|||| || ||||||| ||| | || ||| | | | |||| | ||
Sbjct 46192 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 46246
Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901
|| ||||||| ||| |||| |||||| |||| ||| |||||| || | ||
Sbjct 46247 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 46306
Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961
||| || |||||||| | | |||| || |||| || ||||| || | ||| |||||
Sbjct 46307 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 46366
Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018
| | || ||| || | | || | || | |||| | | |||| |
Sbjct 46367 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 46423
Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078
|| || ||| | |||||||| || ||||| || || || ||||| ||| || |||
Sbjct 46424 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 46483
Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138
|| | ||| ||||| || | ||| || ||||| || || || |||||||| ||||||
Sbjct 46484 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 46543
Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198
||||| || || || || | || ||||| || || || ||| || | |||
Sbjct 46544 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 46600
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258
||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||||
Sbjct 46601 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 46660
Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288
| ||| || | ||| || |||||||||
Sbjct 46661 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 46690
>seq801
Length=188201
Score = 134 bits (148), Expect = 2e-26
Identities = 378/571 (66%), Gaps = 21/571 (4%)
Strand=Plus/Minus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || || |||||||| |||||||| |||||||| | || |||||| ||||||
Sbjct 12049 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 11990
Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841
|||| || ||||||| ||| | || ||| | | | |||| | ||
Sbjct 11989 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 11935
Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901
|| ||||||| ||| |||| |||||| |||| ||| |||||| || | ||
Sbjct 11934 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 11875
Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961
||| || |||||||| | | |||| || |||| || ||||| || | ||| |||||
Sbjct 11874 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 11815
Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018
| | || ||| || | | || | || | |||| | | |||| |
Sbjct 11814 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 11758
Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078
|| || ||| | |||||||| || ||||| || || || ||||| ||| || |||
Sbjct 11757 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 11698
Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138
|| | ||| ||||| || | ||| || ||||| || || || |||||||| ||||||
Sbjct 11697 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 11638
Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198
||||| || || || || | || ||||| || || || ||| || | |||
Sbjct 11637 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 11581
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258
||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||||
Sbjct 11580 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 11521
Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288
| ||| || | ||| || |||||||||
Sbjct 11520 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 11491
>seq322
Length=483061
Score = 123 bits (136), Expect = 3e-23
Identities = 253/373 (68%), Gaps = 6/373 (2%)
Strand=Plus/Plus
Query 11861 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 11920
|||||| ||| | || |||||| || | |||||| || ||||| |||||| |
Sbjct 120942 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGCGCGGCGCATTGGTACAC 121001
Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980
||| ||||| || | || |||| || |||||| ||| ||||| |||||||||||
Sbjct 121002 CGTGAACTACCGCGAGGCATACAGTCTGTTCGCGTGCAATGGGATTCTGTTCAACCACGA 121061
Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040
||| || || || || | |||||||||| |||||||||| | | | ||
Sbjct 121062 GTCGCCGCGGCGGGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 121121
Query 12041 CGTGGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097
| || ||| || |||| || | || |||||||| || | || |||||||||
Sbjct 121122 CAAGGAGGGATTGCAGAGCAAGCTGTTT---TTGGGGAATCTGCAGGCGTCGAGGGACTG 121178
Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157
||| |||| ||||| || || || |||||| | | || || || || || ||||
Sbjct 121179 GGGTTTTGCCGGCGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 121238
Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 12217
||| || || || ||||||| |||| | ||| | || ||||||| | ||| ||| ||
Sbjct 121239 CGACTACGTAGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTGTCGTT 121298
Query 12218 TAGGGAAGTTGGA 12230
| || | || |||
Sbjct 121299 TGGGTACGTGGGA 121311
>seq202
Length=624202
Score = 123 bits (136), Expect = 3e-23
Identities = 380/573 (66%), Gaps = 25/573 (4%)
Strand=Plus/Plus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || || |||||||| |||||||| |||||||| | || |||||| ||||||
Sbjct 31089 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 31148
Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841
| || || ||||||| ||| | || |||| | | |||| | ||
Sbjct 31149 CCAGTCGAAGGGGTTCTGGACATTG---TACATCTTGCCGTATC-CCAACGAGCCC-AGC 31203
Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901
|| ||||||| ||| |||| |||||| |||| ||| |||||| || | ||
Sbjct 31204 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 31263
Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961
||| || |||||||| | | |||| | |||| || ||||| || | ||| |||||
Sbjct 31264 GCACACGGCAGCGCGTCGCACACGAACTCTCTCTCGATCTCCACCGCGTTCCGTACGATC 31323
Query 129962 G-CGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGG 130016
| | | | | ||| || ||| | | || | || | |||| | | ||||
Sbjct 31324 GACATCACCCGA-TCCTCGCTCAGCT-TCTTCCTCA--GCAGTGAATACAGCAAACACG- 31378
Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076
| || || ||| | |||||||| || ||||| || || || ||||| ||| || |
Sbjct 31379 CGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCG 31438
Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136
|||| | ||| ||||| || | ||| || ||||| || || || |||||||| ||||
Sbjct 31439 GCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCC 31498
Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACC 130196
||||||| || || || || | || ||||| || || || ||| || | ||
Sbjct 31499 CCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCC 31555
Query 130197 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 130256
| ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||
Sbjct 31556 ATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGA 31615
Query 130257 GTTCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288
| | ||| || | ||| || |||||||||
Sbjct 31616 GGCGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 31647
>seq122
Length=845292
Score = 93.3 bits (102), Expect = 5e-14
Identities = 194/286 (68%), Gaps = 10/286 (3%)
Strand=Plus/Minus
Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125
||||| || || || | || | ||| |||||| ||||| | ||| ||||| ||
Sbjct 635900 TCAAACCGGCCAGGCCTCAGTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCA 635841
Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185
| || | ||| || || | | ||||| |||||||| || ||||| || ||||| | |
Sbjct 635840 ACCACGATGATACCAGTGTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 635781
Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCGACG 14242
|||||||| | |||||| ||| | |||| || | | | |||| || ||
Sbjct 635780 GTTTGTTCCCTTTCATCGTTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCAACA 635724
Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300
|||||||||||||| | || || || || ||| ||| || ||| |||| ||| |
Sbjct 635723 GCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAA 635666
Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346
||| || |||| ||||| ||||| |||||||| || |||||
Sbjct 635665 GATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 635620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618418332179920
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