Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1330 134 2e-26 seq801 134 2e-26 seq322 123 3e-23 seq202 123 3e-23 seq122 93.3 5e-14 >seq1330 Length=73179 Score = 134 bits (148), Expect = 2e-26 Identities = 378/571 (66%), Gaps = 21/571 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 27048 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 26989 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 |||| || ||||||| ||| | || ||| | | | |||| | || Sbjct 26988 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 26934 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| ||| |||| |||||| |||| ||| |||||| || | || Sbjct 26933 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 26874 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| Sbjct 26873 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 26814 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018 | | || ||| || | | || | || | |||| | | |||| | Sbjct 26813 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 26757 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | |||||||| || ||||| || || || ||||| ||| || ||| Sbjct 26756 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 26697 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | ||| ||||| || | ||| || ||||| || || || |||||||| |||||| Sbjct 26696 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 26637 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 ||||| || || || || | || ||||| || || || ||| || | ||| Sbjct 26636 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 26580 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 26579 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 26520 Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288 | ||| || | ||| || ||||||||| Sbjct 26519 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 26490 Score = 134 bits (148), Expect = 2e-26 Identities = 378/571 (66%), Gaps = 21/571 (4%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 46132 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 46191 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 |||| || ||||||| ||| | || ||| | | | |||| | || Sbjct 46192 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 46246 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| ||| |||| |||||| |||| ||| |||||| || | || Sbjct 46247 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 46306 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| Sbjct 46307 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 46366 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018 | | || ||| || | | || | || | |||| | | |||| | Sbjct 46367 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 46423 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | |||||||| || ||||| || || || ||||| ||| || ||| Sbjct 46424 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 46483 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | ||| ||||| || | ||| || ||||| || || || |||||||| |||||| Sbjct 46484 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 46543 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 ||||| || || || || | || ||||| || || || ||| || | ||| Sbjct 46544 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 46600 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 46601 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 46660 Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288 | ||| || | ||| || ||||||||| Sbjct 46661 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 46690 >seq801 Length=188201 Score = 134 bits (148), Expect = 2e-26 Identities = 378/571 (66%), Gaps = 21/571 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 12049 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 11990 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 |||| || ||||||| ||| | || ||| | | | |||| | || Sbjct 11989 CCAATCGAACGGGTTCTGGACATTG---TACATCTTG-TCGTATCCCAACGAGCCC-AGC 11935 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| ||| |||| |||||| |||| ||| |||||| || | || Sbjct 11934 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 11875 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| || |||||||| | | |||| || |||| || ||||| || | ||| ||||| Sbjct 11874 GCACACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATC 11815 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCA 130018 | | || ||| || | | || | || | |||| | | |||| | Sbjct 11814 GACTTAACCCGATCCTCGCTGAGCTTCTTCCTCA--GCAGTGAATACAGCAAACACG-CG 11758 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | |||||||| || ||||| || || || ||||| ||| || ||| Sbjct 11757 AAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCGGC 11698 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | ||| ||||| || | ||| || ||||| || || || |||||||| |||||| Sbjct 11697 ATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCC 11638 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 ||||| || || || || | || ||||| || || || ||| || | ||| Sbjct 11637 TCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCAT 11581 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| Sbjct 11580 CTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGG 11521 Query 130259 TCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288 | ||| || | ||| || ||||||||| Sbjct 11520 CGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 11491 >seq322 Length=483061 Score = 123 bits (136), Expect = 3e-23 Identities = 253/373 (68%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 11861 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 11920 |||||| ||| | || |||||| || | |||||| || ||||| |||||| | Sbjct 120942 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGCGCGGCGCATTGGTACAC 121001 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 ||| ||||| || | || |||| || |||||| ||| ||||| ||||||||||| Sbjct 121002 CGTGAACTACCGCGAGGCATACAGTCTGTTCGCGTGCAATGGGATTCTGTTCAACCACGA 121061 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040 ||| || || || || | |||||||||| |||||||||| | | | || Sbjct 121062 GTCGCCGCGGCGGGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 121121 Query 12041 CGTGGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097 | || ||| || |||| || | || |||||||| || | || ||||||||| Sbjct 121122 CAAGGAGGGATTGCAGAGCAAGCTGTTT---TTGGGGAATCTGCAGGCGTCGAGGGACTG 121178 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 ||| |||| ||||| || || || |||||| | | || || || || || |||| Sbjct 121179 GGGTTTTGCCGGCGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 121238 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 12217 ||| || || || ||||||| |||| | ||| | || ||||||| | ||| ||| || Sbjct 121239 CGACTACGTAGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTGTCGTT 121298 Query 12218 TAGGGAAGTTGGA 12230 | || | || ||| Sbjct 121299 TGGGTACGTGGGA 121311 >seq202 Length=624202 Score = 123 bits (136), Expect = 3e-23 Identities = 380/573 (66%), Gaps = 25/573 (4%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 31089 ATACTCGCCGACGCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 31148 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 | || || ||||||| ||| | || |||| | | |||| | || Sbjct 31149 CCAGTCGAAGGGGTTCTGGACATTG---TACATCTTGCCGTATC-CCAACGAGCCC-AGC 31203 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 || ||||||| ||| |||| |||||| |||| ||| |||||| || | || Sbjct 31204 AGCCGATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATCCCCACCAGC 31263 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| || |||||||| | | |||| | |||| || ||||| || | ||| ||||| Sbjct 31264 GCACACGGCAGCGCGTCGCACACGAACTCTCTCTCGATCTCCACCGCGTTCCGTACGATC 31323 Query 129962 G-CGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGG 130016 | | | | | ||| || ||| | | || | || | |||| | | |||| Sbjct 31324 GACATCACCCGA-TCCTCGCTCAGCT-TCTTCCTCA--GCAGTGAATACAGCAAACACG- 31378 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || || ||| | |||||||| || ||||| || || || ||||| ||| || | Sbjct 31379 CGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAAGTCAGTCCCG 31438 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||| | ||| ||||| || | ||| || ||||| || || || |||||||| |||| Sbjct 31439 GCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCC 31498 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACC 130196 ||||||| || || || || | || ||||| || || || ||| || | || Sbjct 31499 CCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCC 31555 Query 130197 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 130256 | ||| |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||| Sbjct 31556 ATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGCGTGGAAGA 31615 Query 130257 GTTCCTTCTTTTCTGATGGA-TCTTTGATGTAC 130288 | | ||| || | ||| || ||||||||| Sbjct 31616 GGCGGTGCTTCTC-GTCGGAGTCCTTGATGTAC 31647 >seq122 Length=845292 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | || | ||| |||||| ||||| | ||| ||||| || Sbjct 635900 TCAAACCGGCCAGGCCTCAGTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCA 635841 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | || | ||| || || | | ||||| |||||||| || ||||| || ||||| | | Sbjct 635840 ACCACGATGATACCAGTGTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 635781 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCGACG 14242 |||||||| | |||||| ||| | |||| || | | | |||| || || Sbjct 635780 GTTTGTTCCCTTTCATCGTTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCAACA 635724 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300 |||||||||||||| | || || || || ||| ||| || ||| |||| ||| | Sbjct 635723 GCGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAA 635666 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| ||||| ||||| |||||||| || ||||| Sbjct 635665 GATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 635620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418332179920