Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq340 123 3e-23 seq122 122 1e-22 seq1330 105 8e-18 seq801 105 8e-18 seq202 105 8e-18 >seq340 Length=460696 Score = 123 bits (136), Expect = 3e-23 Identities = 237/340 (70%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| ||||| | | || ||||| || | || | |||||| |||| | || ||| Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTT--CAA 356566 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| ||||||||||| || |||| |||||||||| |||||| ||| || Sbjct 356567 AACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---C 356623 Query 9675 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 |||| |||| | | |||| ||| || || ||||| ||||||| || || |||| Sbjct 356624 CACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGC 356683 Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | ||| ||| || | | | |||| ||| ||||| || || || || || || || Sbjct 356684 AAGGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCC 356741 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 ||||||||| || ||||| | | | ||| || | || || || ||| | ||||| Sbjct 356742 AACAAACATTTCAACAAATTCAGAACCTGAA-ATGGAGAAAAATGGAACACCCGCTTCAC 356800 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||||| || || || |||||||| || || ||||| Sbjct 356801 CAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840 >seq122 Length=845292 Score = 122 bits (134), Expect = 1e-22 Identities = 351/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 9368 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 9427 ||||||||||| |||||||| ||||| ||| ||| || | || | || | | ||| Sbjct 636059 TCATTAAGGAGGTTTGCGAGATCAGCCCCACTGAAGCCAG--GTGTCCTCATGGCTACAA 636002 Query 9428 C-TCAACTTGA-CACCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCT 9485 | |||| | ||| | || | |||||||||| | || ||||| ||||||| Sbjct 636001 CATCAAGAGAAACACTTCCATCAAACTTCTTATTGCTAGCATGAACCTTTAAGATCTCTG 635942 Query 9486 CGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAA 9545 | ||| |||| |||| | | || | || | ||||| || || || | | Sbjct 635941 TTCTTCCTCGAATGTCAGGGACATCAACAGACACCTGCCTGTCAAACCGGCCAGGCCTCA 635882 Query 9546 GGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTT 9605 | | || ||||| ||||| | | || ||||| || | || | ||||| || | Sbjct 635881 GTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGT 635822 Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665 |||||||||||||| ||||||||||| || |||| |||||||||| |||||| | Sbjct 635821 TGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGT 635762 Query 9666 TCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGA 9722 || || |||| |||| | | |||| ||| || || ||||| ||||||| | Sbjct 635761 TCCCT---CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAA 635705 Query 9723 AGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGC 9780 | || ||||| ||| ||| || | | | |||| ||| ||||| || || || || Sbjct 635704 ATACAATGCAAGGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGC 635647 Query 9781 GCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACAT 9839 || |||||||||||||| || ||||| | | | | | || | || || || ||| Sbjct 635646 ACCAACACCAACAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACAC 635588 Query 9840 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || |||||| ||||| || || || |||||||| || || || || Sbjct 635587 CAGCTTCACCAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539 >seq1330 Length=73179 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 26599 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 26658 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 26659 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 26718 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 26719 GAGCTGATCTCGCGAGACGAGGG 26741 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 46581 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 46522 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 46521 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 46462 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 46461 GAGCTGATCTCGCGAGACGAGGG 46439 >seq801 Length=188201 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 11600 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 11659 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 11660 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 11719 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 11720 GAGCTGATCTCGCGAGACGAGGG 11742 >seq202 Length=624202 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 31538 TCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 31479 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 31478 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 31419 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 31418 GAGCTGATCTCGCGAGACGAGGG 31396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244891561680