Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq340 123 3e-23
seq122 122 1e-22
seq1330 105 8e-18
seq801 105 8e-18
seq202 105 8e-18
>seq340
Length=460696
Score = 123 bits (136), Expect = 3e-23
Identities = 237/340 (70%), Gaps = 16/340 (5%)
Strand=Plus/Plus
Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614
||||| ||||| | | || ||||| || | || | |||||| |||| | || |||
Sbjct 356509 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATAATACCAGTGTTGCCTT--CAA 356566
Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674
|||||||||| ||||||||||| || |||| |||||||||| |||||| ||| ||
Sbjct 356567 AACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT---C 356623
Query 9675 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
|||| |||| | | |||| ||| || || ||||| ||||||| || || ||||
Sbjct 356624 CACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGC 356683
Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789
| ||| ||| || | | | |||| ||| ||||| || || || || || || ||
Sbjct 356684 AAGGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACCCC 356741
Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848
||||||||| || ||||| | | | ||| || | || || || ||| | |||||
Sbjct 356742 AACAAACATTTCAACAAATTCAGAACCTGAA-ATGGAGAAAAATGGAACACCCGCTTCAC 356800
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| ||||| || || || |||||||| || || |||||
Sbjct 356801 CAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 356840
>seq122
Length=845292
Score = 122 bits (134), Expect = 1e-22
Identities = 351/529 (66%), Gaps = 16/529 (3%)
Strand=Plus/Minus
Query 9368 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 9427
||||||||||| |||||||| ||||| ||| ||| || | || | || | | |||
Sbjct 636059 TCATTAAGGAGGTTTGCGAGATCAGCCCCACTGAAGCCAG--GTGTCCTCATGGCTACAA 636002
Query 9428 C-TCAACTTGA-CACCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCT 9485
| |||| | ||| | || | |||||||||| | || ||||| |||||||
Sbjct 636001 CATCAAGAGAAACACTTCCATCAAACTTCTTATTGCTAGCATGAACCTTTAAGATCTCTG 635942
Query 9486 CGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAA 9545
| ||| |||| |||| | | || | || | ||||| || || || | |
Sbjct 635941 TTCTTCCTCGAATGTCAGGGACATCAACAGACACCTGCCTGTCAAACCGGCCAGGCCTCA 635882
Query 9546 GGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTT 9605
| | || ||||| ||||| | | || ||||| || | || | ||||| || |
Sbjct 635881 GTAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACGATGATACCAGTGT 635822
Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665
|||||||||||||| ||||||||||| || |||| |||||||||| |||||| |
Sbjct 635821 TGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGT 635762
Query 9666 TCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGA 9722
|| || |||| |||| | | |||| ||| || || ||||| ||||||| |
Sbjct 635761 TCCCT---CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAA 635705
Query 9723 AGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGC 9780
| || ||||| ||| ||| || | | | |||| ||| ||||| || || || ||
Sbjct 635704 ATACAATGCAAGGTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGC 635647
Query 9781 GCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACAT 9839
|| |||||||||||||| || ||||| | | | | | || | || || || |||
Sbjct 635646 ACCAACACCAACAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACAC 635588
Query 9840 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| |||||| ||||| || || || |||||||| || || || ||
Sbjct 635587 CAGCTTCACCAGCAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCCGG 635539
>seq1330
Length=73179
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 26599 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 26658
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 26659 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 26718
Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937
||||| ||||| || ||||||||
Sbjct 26719 GAGCTGATCTCGCGAGACGAGGG 26741
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 46581 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 46522
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 46521 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 46462
Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937
||||| ||||| || ||||||||
Sbjct 46461 GAGCTGATCTCGCGAGACGAGGG 46439
>seq801
Length=188201
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 11600 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 11659
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 11660 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 11719
Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937
||||| ||||| || ||||||||
Sbjct 11720 GAGCTGATCTCGCGAGACGAGGG 11742
>seq202
Length=624202
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || |||||| || | || ||||| || || ||||| || |||||||| ||
Sbjct 31538 TCTTTCGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 31479
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||| || ||||| ||| | ||||| || || |||||||||
Sbjct 31478 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 31419
Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937
||||| ||||| || ||||||||
Sbjct 31418 GAGCTGATCTCGCGAGACGAGGG 31396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583244891561680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |