Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1330 203 4e-47 seq801 203 4e-47 seq202 192 6e-44 >seq1330 Length=73179 Score = 203 bits (224), Expect = 4e-47 Identities = 587/874 (67%), Gaps = 32/874 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 26191 TTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGG 26250 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| ||| | || || Sbjct 26251 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCACTGGGA--AGCCCTATCCGAC 26307 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || ||||| || || Sbjct 26308 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTC 26367 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 26368 CTTGAAAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 26427 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| || ||| ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 26428 TACGGGTTCCAGATCGC-CATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGA 26486 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || ||||||| | || |||||| | || |||| || || || || |||| Sbjct 26487 GACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCC 26546 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATT 59974 | || || | || || | |||||| || ||||| || || ||| || || Sbjct 26547 CTGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTT 26603 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || | || ||||| |||||||| || || |||||||| || ||||| Sbjct 26604 CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTG 26663 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||||| |||||||| || | |||||||| |||| ||||||||||||||| Sbjct 26664 CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCT 26723 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTAT 60153 ||| || || ||||||||| | || || || || ||| ||| ||||||| || Sbjct 26724 GATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTATTCACTGCT-G 26781 Query 60154 TGGAAAAATGCCCTTCCAAGGAT---ATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TG 60209 |||| || || | | ||||| || | ||| || | | || ||| || | Sbjct 26782 AGGAAGAA-GCTC-AGCGAGGATCGGGTTAAGTCGATCGTACGGAACGC-GGTGGAGATC 26838 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||||| |||||| | || ||||| || || || | || ||| || || || Sbjct 26839 GAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGGATGAAC---GGCGAT 26895 Query 60270 ATGA--CGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 ||| ||| |||||| |||| || ||||| || || ||| | ||| ||| | || Sbjct 26896 CTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGA-TACGA 26954 Query 60327 CCA-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385 | | || ||| || | ||||| ||||| ||||||||| ||| || | ||||| Sbjct 26955 CAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAA 27014 Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||||||||||||||||||| ||||| || ||| Sbjct 27015 GACCAACTTCTTTGAGAAGCGCGTCGGCGAGTAT 27048 Score = 203 bits (224), Expect = 4e-47 Identities = 587/874 (67%), Gaps = 32/874 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 46989 TTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGG 46930 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| ||| | || || Sbjct 46929 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCACTGGGA--AGCCCTATCCGAC 46873 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || ||||| || || Sbjct 46872 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTC 46813 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 46812 CTTGAAAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 46753 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| || ||| ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 46752 TACGGGTTCCAGATCGC-CATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGA 46694 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || ||||||| | || |||||| | || |||| || || || || |||| Sbjct 46693 GACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCC 46634 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATT 59974 | || || | || || | |||||| || ||||| || || ||| || || Sbjct 46633 CTGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTT 46577 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || | || ||||| |||||||| || || |||||||| || ||||| Sbjct 46576 CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTG 46517 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||||| |||||||| || | |||||||| |||| ||||||||||||||| Sbjct 46516 CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCT 46457 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTAT 60153 ||| || || ||||||||| | || || || || ||| ||| ||||||| || Sbjct 46456 GATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTATTCACTGCT-G 46399 Query 60154 TGGAAAAATGCCCTTCCAAGGAT---ATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TG 60209 |||| || || | | ||||| || | ||| || | | || ||| || | Sbjct 46398 AGGAAGAA-GCTC-AGCGAGGATCGGGTTAAGTCGATCGTACGGAACGC-GGTGGAGATC 46342 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||||| |||||| | || ||||| || || || | || ||| || || || Sbjct 46341 GAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGGATGAAC---GGCGAT 46285 Query 60270 ATGA--CGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 ||| ||| |||||| |||| || ||||| || || ||| | ||| ||| | || Sbjct 46284 CTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGA-TACGA 46226 Query 60327 CCA-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385 | | || ||| || | ||||| ||||| ||||||||| ||| || | ||||| Sbjct 46225 CAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAA 46166 Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||||||||||||||||||| ||||| || ||| Sbjct 46165 GACCAACTTCTTTGAGAAGCGCGTCGGCGAGTAT 46132 >seq801 Length=188201 Score = 203 bits (224), Expect = 4e-47 Identities = 587/874 (67%), Gaps = 32/874 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 11192 TTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGG 11251 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| ||| | || || Sbjct 11252 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCACTGGGA--AGCCCTATCCGAC 11308 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || ||||| || || Sbjct 11309 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTC 11368 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 11369 CTTGAAAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 11428 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| || ||| ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 11429 TACGGGTTCCAGATCGC-CATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGA 11487 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || ||||||| | || |||||| | || |||| || || || || |||| Sbjct 11488 GACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCC 11547 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATT 59974 | || || | || || | |||||| || ||||| || || ||| || || Sbjct 11548 CTGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTT 11604 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || | || ||||| |||||||| || || |||||||| || ||||| Sbjct 11605 CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTG 11664 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||||| |||||||| || | |||||||| |||| ||||||||||||||| Sbjct 11665 CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCT 11724 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTAT 60153 ||| || || ||||||||| | || || || || ||| ||| ||||||| || Sbjct 11725 GATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTATTCACTGCT-G 11782 Query 60154 TGGAAAAATGCCCTTCCAAGGAT---ATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TG 60209 |||| || || | | ||||| || | ||| || | | || ||| || | Sbjct 11783 AGGAAGAA-GCTC-AGCGAGGATCGGGTTAAGTCGATCGTACGGAACGC-GGTGGAGATC 11839 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 ||||| |||||| | || ||||| || || || | || ||| || || || Sbjct 11840 GAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGGATGAAC---GGCGAT 11896 Query 60270 ATGA--CGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGA 60326 ||| ||| |||||| |||| || ||||| || || ||| | ||| ||| | || Sbjct 11897 CTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGA-TACGA 11955 Query 60327 CCA-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385 | | || ||| || | ||||| ||||| ||||||||| ||| || | ||||| Sbjct 11956 CAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAA 12015 Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||||||||||||||||||| ||||| || ||| Sbjct 12016 GACCAACTTCTTTGAGAAGCGCGTCGGCGAGTAT 12049 >seq202 Length=624202 Score = 192 bits (212), Expect = 6e-44 Identities = 584/877 (67%), Gaps = 38/877 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | |||||| || | |||| |||| ||||| || | || |||||| Sbjct 31946 TTTCCGATCCAGTACCCAGAAATATGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGG 31887 Query 59622 TCCGTCGAGGAGATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATT--AC 59678 ||| ||||||| | ||||| ||| | ||| | | ||||| ||| | || || Sbjct 31886 ACCGCCGAGGAGGTCGACCTATGCCAG-GACATCCGCCAGTGGGA--AGCCCTATCCGAC 31830 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 | |||| ||| ||| || | | || ||||||||||| || || || ||||| Sbjct 31829 GGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTC 31770 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | |||||| | | || ||| ||||| |||||| | ||||||||||| | ||| Sbjct 31769 CTTGAAAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 31710 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| || ||| ||| || ||| ||||||||||||| |||| ||| | |||| Sbjct 31709 TACGGGTTCCAGATCGC-CATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGA 31651 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || ||||||| | || |||||| | || |||| || || || || |||| Sbjct 31650 GACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCC 31591 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATT 59974 || || | || || | |||||| || ||||| || || ||| || || Sbjct 31590 TTGC-GTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAG--TCTTT 31534 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || |||| ||||| |||||||| || || |||||||| || ||||| Sbjct 31533 CGCGGAGCGAATCGTAGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTG 31474 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||||| |||||||| || | |||||||| |||| ||||||||||||||| Sbjct 31473 CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCT 31414 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTAT 60153 ||| || || ||||||||| | || || || || ||| ||| ||||||| || Sbjct 31413 GATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC-GTGTTTGCTGTATTCACTGCT-G 31356 Query 60154 TGGAAAAATGCCCTTCCAAGGAT------AT-TCACAAGATTGTTCAGTGGGCTTGTGAA 60206 |||| || | | ||||| || || ||| || | | || ||| | Sbjct 31355 AGGAAGAA--GCTGAGCGAGGATCGGGTGATGTC----GATCGTACGGAACGC-GGTGGA 31303 Query 60207 G-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | | ||||| |||||| | || ||||| || || || | || ||| || || Sbjct 31302 GATCGAGAGAGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGGATGAAC---GG 31246 Query 60266 AGAAATGA--CGCA-GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGA 60322 || ||| ||| |||||| |||| || ||||| || || ||| | ||| ||| | Sbjct 31245 CGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATA 31186 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 || || ||| || | ||||| ||||||||||||||| ||| || | || Sbjct 31185 CGGCAAGATGTACAATGTCCAGAACCCCTTCGACTGGATGGAGCTGATCAGCCTGCAGGG 31126 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 |||||||||||||||||||||||| ||||| || ||| Sbjct 31125 GAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTAT 31089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509838986080