Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq474 86.0 7e-12 seq95 86.0 7e-12 seq47 86.0 7e-12 seq36 86.0 7e-12 seq29 86.0 7e-12 seq254 82.4 8e-11 seq3 82.4 8e-11 >seq1 Length=4167794 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1803136 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1803195 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 1803196 TGAGCTATGAAAGCA 1803210 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1803790 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1803849 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1803850 TGAGCTATGAAAGC 1803863 >seq474 Length=355276 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 52715 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 52656 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 52655 TGAGCTATGAAAGC 52642 >seq95 Length=947498 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 567833 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 567892 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 567893 TGAGCTATGAAAGC 567906 >seq47 Length=1224013 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 254115 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 254174 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 254175 TGAGCTATGAAAGC 254188 >seq36 Length=1322911 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1224781 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1224840 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1224841 TGAGCTATGAAAGC 1224854 >seq29 Length=1383576 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 993332 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 993391 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 993392 TGAGCTATGAAAGC 993405 >seq254 Length=551496 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 241675 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 241616 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 241615 TGAGCTACGAGAGCA 241601 >seq3 Length=3914344 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1102512 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1102453 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1102452 TGAGCTACGAGAGCA 1102438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201074683600