Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_028760.1
Length=49037
Score E
Sequences producing significant alignments: (Bits) Value
seq768 168 2e-37
seq2064 86.0 2e-12
>seq768
Length=200800
Score = 168 bits (186), Expect = 2e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45806 GTATTTAGCTTCGAAAGTCGTTCCGTCCGATACACTGAAGCCAACCTCTTCGCGGTACAG 45865
|||||| || || || || || || || | | ||| || || | ||||||||| | |
Sbjct 197113 GTATTTGGCCTCAAAGGTTGTGCCATCTGCGATACTAAAACCGATCTCTTCGCGAAATAA 197172
Query 45866 CGTCCAGCGGCATCCGTCACGGTCGAAGATGTATCCAGCGACAGCACCGAGCGCACGACC 45925
||||| ||||||||||| || |||||||| ||||| || | ||||| || |||||
Sbjct 197173 TGTCCAACGGCATCCGTCCTCATCAAAGATGTAACCAGCTACGCCGCCGAGAGCGCGACC 197232
Query 45926 ACTTTCTACCTGGTATCGCTTACCGACGCTGAAGGATTTTTTCATCGGGTTGCTGTGGTC 45985
|||||||||||||| ||||| || || |||| ||||||||||||||||||| |||||
Sbjct 197233 GCTTTCTACCTGGTAACGCTTTCCAACTTTGAATGATTTTTTCATCGGGTTGCGATGGTC 197292
Query 45986 AAGGCCGACGCATTTTAGCGTTTTGGTTTTGAGTTCGATGAACGTCGC 46033
||| ||| ||| |||||||| || ||||| | ||| |||| ||||
Sbjct 197293 AAGTCCGGTGCACTTTAGCGTCTTTGTTTTCAACTCGGTGAATTTCGC 197340
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785
Query 5805 --GAACCAATCAG 5815
||||||||||
Sbjct 3786 AGCAACCAATCAG 3798
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963
Query 5805 --GAACCAATCAG 5815
||||||||||
Sbjct 53964 AGCAACCAATCAG 53976
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415
Query 5805 --GAACCAATCAG 5815
||||||||||
Sbjct 104416 AGCAACCAATCAG 104428
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761
Query 5805 --GAACCAATCAG 5815
||||||||||
Sbjct 154762 AGCAACCAATCAG 154774
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||
Sbjct 679 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 737
Query 1378 GA-ACCGAGGAAAGCGAA 1394
|| || ||||||| ||||
Sbjct 738 GATACAGAGGAAA-CGAA 754
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||
Sbjct 50857 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 50915
Query 1378 GA-ACCGAGGAAAGCGAA 1394
|| || ||||||| ||||
Sbjct 50916 GATACAGAGGAAA-CGAA 50932
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||
Sbjct 101245 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 101303
Query 1378 GA-ACCGAGGAAAGCGAA 1394
|| || ||||||| ||||
Sbjct 101304 GATACAGAGGAAA-CGAA 101320
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||
Sbjct 151655 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 151713
Query 1378 GA-ACCGAGGAAAGCGAA 1394
|| || ||||||| ||||
Sbjct 151714 GATACAGAGGAAA-CGAA 151730
Score = 86.0 bits (94), Expect = 2e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 5742 GGCAAATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGA 5801
|| ||||||||| |||| ||| | | ||| |||| ||||||||| |||||||||||| |
Sbjct 197608 GGTAAATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCCTTATTCA 197549
Query 5802 AGCGAACCAATCAGGAGCTA 5821
|| ||||||||||||||||
Sbjct 197548 AGATAACCAATCAGGAGCTA 197529
>seq2064
Length=2442
Score = 86.0 bits (94), Expect = 2e-12
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| ||
Sbjct 684 AATAGCACTTTTTGTTAAATCCCGGTCGAGCGGATCGGGTATTATCTTTTCATCGAC-AC 742
Query 1378 GA-ACCGAGGAAAGCGAAATG 1397
|| || ||||||| || |||
Sbjct 743 GACACAGAGGAAACGGAGATG 763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156792737198916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |