Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028760.1 Length=49037 Score E Sequences producing significant alignments: (Bits) Value seq768 168 2e-37 seq2064 86.0 2e-12 >seq768 Length=200800 Score = 168 bits (186), Expect = 2e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45806 GTATTTAGCTTCGAAAGTCGTTCCGTCCGATACACTGAAGCCAACCTCTTCGCGGTACAG 45865 |||||| || || || || || || || | | ||| || || | ||||||||| | | Sbjct 197113 GTATTTGGCCTCAAAGGTTGTGCCATCTGCGATACTAAAACCGATCTCTTCGCGAAATAA 197172 Query 45866 CGTCCAGCGGCATCCGTCACGGTCGAAGATGTATCCAGCGACAGCACCGAGCGCACGACC 45925 ||||| ||||||||||| || |||||||| ||||| || | ||||| || ||||| Sbjct 197173 TGTCCAACGGCATCCGTCCTCATCAAAGATGTAACCAGCTACGCCGCCGAGAGCGCGACC 197232 Query 45926 ACTTTCTACCTGGTATCGCTTACCGACGCTGAAGGATTTTTTCATCGGGTTGCTGTGGTC 45985 |||||||||||||| ||||| || || |||| ||||||||||||||||||| ||||| Sbjct 197233 GCTTTCTACCTGGTAACGCTTTCCAACTTTGAATGATTTTTTCATCGGGTTGCGATGGTC 197292 Query 45986 AAGGCCGACGCATTTTAGCGTTTTGGTTTTGAGTTCGATGAACGTCGC 46033 ||| ||| ||| |||||||| || ||||| | ||| |||| |||| Sbjct 197293 AAGTCCGGTGCACTTTAGCGTCTTTGTTTTCAACTCGGTGAATTTCGC 197340 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785 Query 5805 --GAACCAATCAG 5815 |||||||||| Sbjct 3786 AGCAACCAATCAG 3798 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963 Query 5805 --GAACCAATCAG 5815 |||||||||| Sbjct 53964 AGCAACCAATCAG 53976 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415 Query 5805 --GAACCAATCAG 5815 |||||||||| Sbjct 104416 AGCAACCAATCAG 104428 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 5747 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 5804 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761 Query 5805 --GAACCAATCAG 5815 |||||||||| Sbjct 154762 AGCAACCAATCAG 154774 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377 ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| || Sbjct 679 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 737 Query 1378 GA-ACCGAGGAAAGCGAA 1394 || || ||||||| |||| Sbjct 738 GATACAGAGGAAA-CGAA 754 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377 ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| || Sbjct 50857 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 50915 Query 1378 GA-ACCGAGGAAAGCGAA 1394 || || ||||||| |||| Sbjct 50916 GATACAGAGGAAA-CGAA 50932 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377 ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| || Sbjct 101245 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 101303 Query 1378 GA-ACCGAGGAAAGCGAA 1394 || || ||||||| |||| Sbjct 101304 GATACAGAGGAAA-CGAA 101320 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377 ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| || Sbjct 151655 AATAGCACTTTTTGTTAAAGCCCGGTCGAGAGGATCGGGTATTATCTTTTCATCGAC-AC 151713 Query 1378 GA-ACCGAGGAAAGCGAA 1394 || || ||||||| |||| Sbjct 151714 GATACAGAGGAAA-CGAA 151730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5742 GGCAAATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGA 5801 || ||||||||| |||| ||| | | ||| |||| ||||||||| |||||||||||| | Sbjct 197608 GGTAAATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCCTTATTCA 197549 Query 5802 AGCGAACCAATCAGGAGCTA 5821 || |||||||||||||||| Sbjct 197548 AGATAACCAATCAGGAGCTA 197529 >seq2064 Length=2442 Score = 86.0 bits (94), Expect = 2e-12 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 1318 AATAGCACTTTTTGTTAAAACCCGGTCAGGGAGATCGGGTATTATCTTTCCATCGACAAC 1377 ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| || Sbjct 684 AATAGCACTTTTTGTTAAATCCCGGTCGAGCGGATCGGGTATTATCTTTTCATCGAC-AC 742 Query 1378 GA-ACCGAGGAAAGCGAAATG 1397 || || ||||||| || ||| Sbjct 743 GACACAGAGGAAACGGAGATG 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156792737198916