Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028786.1 Length=49462 Score E Sequences producing significant alignments: (Bits) Value seq768 168 2e-37 seq2064 86.0 2e-12 >seq768 Length=200800 Score = 168 bits (186), Expect = 2e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29228 GCGACGTTCATCGAACTCAAAACCAAAACGCTAAAATGCGTCGGCCTTGACCATAGCAAC 29287 |||| |||| ||| | ||||| || |||||||| ||| ||| ||||||||| ||||| Sbjct 197340 GCGAAATTCACCGAGTTGAAAACAAAGACGCTAAAGTGCACCGGACTTGACCATCGCAAC 197281 Query 29288 CCGATGAAAAAATCCTTCAGCGTCGGCAAGCGCTACCAGGTAGAAAGCGGTCGTGCGCTC 29347 |||||||||||||| |||| || || ||||| |||||||||||||||||||| || ||| Sbjct 197280 CCGATGAAAAAATCATTCAAAGTTGGAAAGCGTTACCAGGTAGAAAGCGGTCGCGCTCTC 197221 Query 29348 GGCGCGGTTGCTGGATACATCTTCGACCGTGACGGTTGCCGCTGGACGCTGTACCGCGAG 29407 |||| || ||||| |||||||| || ||||| ||||| ||||| | | ||||| Sbjct 197220 GGCGGCGTAGCTGGTTACATCTTTGATGAGGACGGATGCCGTTGGACATTATTTCGCGAA 197161 Query 29408 GAAGTGGGCTTCAGTGTATCGGACGGAACGACTTTCGAAGCTAAATAC 29455 || | || || ||| | | || || || || || || || |||||| Sbjct 197160 GAGATCGGTTTTAGTATCGCAGATGGCACAACCTTTGAGGCCAAATAC 197113 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899 |||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| | Sbjct 754 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 697 Query 24900 TTAACAAAAAGTGCTATT 24917 |||||||||||||||||| Sbjct 696 TTAACAAAAAGTGCTATT 679 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899 |||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| | Sbjct 50932 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 50875 Query 24900 TTAACAAAAAGTGCTATT 24917 |||||||||||||||||| Sbjct 50874 TTAACAAAAAGTGCTATT 50857 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899 |||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| | Sbjct 101320 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 101263 Query 24900 TTAACAAAAAGTGCTATT 24917 |||||||||||||||||| Sbjct 101262 TTAACAAAAAGTGCTATT 101245 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899 |||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| | Sbjct 151730 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 151673 Query 24900 TTAACAAAAAGTGCTATT 24917 |||||||||||||||||| Sbjct 151672 TTAACAAAAAGTGCTATT 151655 Score = 82.4 bits (90), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 22013 TTCATTGCGTT-GCTCCTGATTGGATTGTTCACTTCAGTAACGCCACTTTATCAAATGAC 22071 ||||| ||| | |||||||||||| || ||| | ||| |||||||||||||||||| Sbjct 197519 TTCATGGCGCTAGCTCCTGATTGG----TTATCTTGAATAAGGCCACTTTATCAAATGAC 197574 Query 22072 GTTACGGCAGTTTTAACAAAAAGTGCTATT 22101 |||||||| | |||||||| |||||||| Sbjct 197575 CTTACGGCAATATTAACAAATCGTGCTATT 197604 >seq2064 Length=2442 Score = 86.0 bits (94), Expect = 2e-12 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 24838 CATTTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGG 24896 ||| || ||||||| || |||| ||||||||| ||||||||||||||| | |||||| Sbjct 763 CATCTCCGTTTCCTCTGTGTCGT-GTCGATGAAAAGATAATACCCGATCCGCTCGACCGG 705 Query 24897 GTTTTAACAAAAAGTGCTATT 24917 | ||||||||||||||||||| Sbjct 704 GATTTAACAAAAAGTGCTATT 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158152701959616