Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_028786.1
Length=49462
Score E
Sequences producing significant alignments: (Bits) Value
seq768 168 2e-37
seq2064 86.0 2e-12
>seq768
Length=200800
Score = 168 bits (186), Expect = 2e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29228 GCGACGTTCATCGAACTCAAAACCAAAACGCTAAAATGCGTCGGCCTTGACCATAGCAAC 29287
|||| |||| ||| | ||||| || |||||||| ||| ||| ||||||||| |||||
Sbjct 197340 GCGAAATTCACCGAGTTGAAAACAAAGACGCTAAAGTGCACCGGACTTGACCATCGCAAC 197281
Query 29288 CCGATGAAAAAATCCTTCAGCGTCGGCAAGCGCTACCAGGTAGAAAGCGGTCGTGCGCTC 29347
|||||||||||||| |||| || || ||||| |||||||||||||||||||| || |||
Sbjct 197280 CCGATGAAAAAATCATTCAAAGTTGGAAAGCGTTACCAGGTAGAAAGCGGTCGCGCTCTC 197221
Query 29348 GGCGCGGTTGCTGGATACATCTTCGACCGTGACGGTTGCCGCTGGACGCTGTACCGCGAG 29407
|||| || ||||| |||||||| || ||||| ||||| ||||| | | |||||
Sbjct 197220 GGCGGCGTAGCTGGTTACATCTTTGATGAGGACGGATGCCGTTGGACATTATTTCGCGAA 197161
Query 29408 GAAGTGGGCTTCAGTGTATCGGACGGAACGACTTTCGAAGCTAAATAC 29455
|| | || || ||| | | || || || || || || || ||||||
Sbjct 197160 GAGATCGGTTTTAGTATCGCAGATGGCACAACCTTTGAGGCCAAATAC 197113
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Minus
Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899
|||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| |
Sbjct 754 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 697
Query 24900 TTAACAAAAAGTGCTATT 24917
||||||||||||||||||
Sbjct 696 TTAACAAAAAGTGCTATT 679
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Minus
Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899
|||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| |
Sbjct 50932 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 50875
Query 24900 TTAACAAAAAGTGCTATT 24917
||||||||||||||||||
Sbjct 50874 TTAACAAAAAGTGCTATT 50857
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Minus
Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899
|||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| |
Sbjct 101320 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 101263
Query 24900 TTAACAAAAAGTGCTATT 24917
||||||||||||||||||
Sbjct 101262 TTAACAAAAAGTGCTATT 101245
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/78 (87%), Gaps = 3/78 (4%)
Strand=Plus/Minus
Query 24841 TTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGGGTT 24899
|||| ||||||| || |||| ||||||||| ||||||||||||||| | ||||||| |
Sbjct 151730 TTCG-TTTCCTCTGTATCGT-GTCGATGAAAAGATAATACCCGATCCTCTCGACCGGGCT 151673
Query 24900 TTAACAAAAAGTGCTATT 24917
||||||||||||||||||
Sbjct 151672 TTAACAAAAAGTGCTATT 151655
Score = 82.4 bits (90), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 5/90 (6%)
Strand=Plus/Plus
Query 22013 TTCATTGCGTT-GCTCCTGATTGGATTGTTCACTTCAGTAACGCCACTTTATCAAATGAC 22071
||||| ||| | |||||||||||| || ||| | ||| ||||||||||||||||||
Sbjct 197519 TTCATGGCGCTAGCTCCTGATTGG----TTATCTTGAATAAGGCCACTTTATCAAATGAC 197574
Query 22072 GTTACGGCAGTTTTAACAAAAAGTGCTATT 22101
|||||||| | |||||||| ||||||||
Sbjct 197575 CTTACGGCAATATTAACAAATCGTGCTATT 197604
>seq2064
Length=2442
Score = 86.0 bits (94), Expect = 2e-12
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand=Plus/Minus
Query 24838 CATTTCGCTTTCCTCGGT-TCGTTGTCGATGAAGAGATAATACCCGATCTCCCTGACCGG 24896
||| || ||||||| || |||| ||||||||| ||||||||||||||| | ||||||
Sbjct 763 CATCTCCGTTTCCTCTGTGTCGT-GTCGATGAAAAGATAATACCCGATCCGCTCGACCGG 705
Query 24897 GTTTTAACAAAAAGTGCTATT 24917
| |||||||||||||||||||
Sbjct 704 GATTTAACAAAAAGTGCTATT 684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158152701959616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |