Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028901.1 Length=43900 Score E Sequences producing significant alignments: (Bits) Value seq768 104 7e-18 >seq768 Length=200800 Score = 104 bits (114), Expect = 7e-18 Identities = 252/370 (68%), Gaps = 14/370 (4%) Strand=Plus/Minus Query 1395 GCCAGATATCATCTATG-CGTTTCCTCCGTGCACGGATCTGGCAGTGAGCGGCGCGCCAG 1453 ||| ||| |||| |||| | || || |||||||| || ||||| || || || || | | Sbjct 200172 GCCGGATTTCAT-TATGGCCTTCCCGCCGTGCACTGACCTGGCCGTTAGTGGTGCTCGAC 200114 Query 1454 -CTTTCCCGCGCAAACGTGCAAAAGACCCCGCCTTTCAGCTTAAGGCGGTGCGCACCGCG 1512 |||| || |||| ||| | || || || ||| || || || |||||| Sbjct 200113 ACTTTGCCA-GCAAGCGTAAACGTGATCCGCTATTCCAGGAGAAAGCTGTTGCCACCGCC 200055 Query 1513 AAGATCGCCGCTTACCTGGGTGACTTCTTCGAAGTGCCATATATGATTGAGAATCCGCGC 1572 ||| ||||| || | ||||| | | | ||| | || || |||||||||||| Sbjct 200054 CGGATTGCCGCGAACATCGGTGATAGCCTGGGTGTGACTTACATCATTGAGAATCCGGTT 199995 Query 1573 AGTGTGCTTTC--CACCCAGTGGCGCAAGCCGGATCACTCGTTCGACCCGTGGGAGTATG 1630 || || || || || || ||||| ||| | || ||| | ||| | || |||||||||| Sbjct 199994 AGCGTCCTGTCATCAGCC--TGGCGAAAGGCTGACCACACTTTCAATCCCTGGGAGTATG 199937 Query 1631 GGGGGTATCTGCCGGAGGATGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGC 1689 | || ||||| || ||| |||||| |||||| |||||| || || |||| ||| Sbjct 199936 GCGGCTATCTTCCTGAGAATGACGCACACCCCTGGTTCCCGATGTATAT-TGCGCCGCGC 199878 Query 1690 GATTCATATCCGAAGCTGACTTGCTTATGGAC--CGGCAACGGCTTCCGTATGCCAGAGA 1747 ||| | || |||||| ||||| | ||||| ||| ||| ||| |||||||| | Sbjct 199877 GATGCTTACCCGAAGAAAACTTGTCTTTGGACTTCGG--ACGACTTTGTCATGCCAGAAA 199820 Query 1748 AGAAACCTGT 1757 ||| ||||| Sbjct 199819 GGAAGCCTGT 199810 Score = 87.8 bits (96), Expect = 5e-13 Identities = 245/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 1395 GCCAGATATCATCTATGCGTTTCC-TCCGTGCACGGATCTGGCAGTGAGCGGCGCGC--C 1451 ||| ||| | || |||| ||||| ||| ||||| || ||||| || || || || | | Sbjct 49171 GCCGGATTTTAT-TATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCTCGTC 49113 Query 1452 AGCTTTCCCGCGCAAACGTGCAAAAGACCCCGCCTTTCAGCTTAAGGCGGTGCGCACCGC 1511 | |||| || | || |||| | || || || ||| ||||| || |||||| Sbjct 49112 A-CTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCACCGC 49055 Query 1512 GAAGATCGCCGCTTACCTGGGTGACTTCTTCGAAGTGCCATATATGATTGAGAATCCGCG 1571 ||| || || || | ||||| | | ||| | || || |||||||||||| Sbjct 49054 TCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCCGGT 48995 Query 1572 CAGTGTGCTTTCCACCCAGTGGCGCAAGCCGGATCACTCGTTCGACCCGTGGGAGTATGG 1631 || || || || | |||| | || || ||||||| ||| | || |||||||| || Sbjct 48994 GAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTACGG 48935 Query 1632 GGGGTATCTGCCGGAGGATGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGCG 1690 || ||||| || |||||||||| ||||| |||||| || || |||| |||| Sbjct 48934 CGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGCGCG 48876 Query 1691 ATTCATATCCGAAGCTGACTTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGAAGA 1750 || | || |||||| ||||| | |||||| ||| || ||||| |||| | Sbjct 48875 ATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGAGAA 48816 Query 1751 AACCTGT 1757 ||||||| Sbjct 48815 AACCTGT 48809 Score = 87.8 bits (96), Expect = 5e-13 Identities = 245/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 1395 GCCAGATATCATCTATGCGTTTCC-TCCGTGCACGGATCTGGCAGTGAGCGGCGCGC--C 1451 ||| ||| | || |||| ||||| ||| ||||| || ||||| || || || || | | Sbjct 99507 GCCGGATTTTAT-TATGGCTTTCCCTCCATGCACTGACCTGGCTGTTAGTGGTGCTCGTC 99449 Query 1452 AGCTTTCCCGCGCAAACGTGCAAAAGACCCCGCCTTTCAGCTTAAGGCGGTGCGCACCGC 1511 | |||| || | || |||| | || || || ||| ||||| || |||||| Sbjct 99448 A-CTTTGCCA-GTAAGCGTGAACGTGATCCGTTATTCCAGGAGAAGGCTGTTGCCACCGC 99391 Query 1512 GAAGATCGCCGCTTACCTGGGTGACTTCTTCGAAGTGCCATATATGATTGAGAATCCGCG 1571 ||| || || || | ||||| | | ||| | || || |||||||||||| Sbjct 99390 TCGGATAGCTGCGAACATTGGTGAGGAGCTTGGTGTGACTTACATCATTGAGAATCCGGT 99331 Query 1572 CAGTGTGCTTTCCACCCAGTGGCGCAAGCCGGATCACTCGTTCGACCCGTGGGAGTATGG 1631 || || || || | |||| | || || ||||||| ||| | || |||||||| || Sbjct 99330 GAGCGTCCTGTCGTCTGCGTGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTACGG 99271 Query 1632 GGGGTATCTGCCGGAGGATGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGCG 1690 || ||||| || |||||||||| ||||| |||||| || || |||| |||| Sbjct 99270 CGGCTATCTTCCTGAGGATGACGCGCACCCCTGGTTCCCGATGTATAT-TGCGCCGCGCG 99212 Query 1691 ATTCATATCCGAAGCTGACTTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGAAGA 1750 || | || |||||| ||||| | |||||| ||| || ||||| |||| | Sbjct 99211 ATGCTTACCCGAAGAAAACTTGTCTGTGGACCTCTGACGATTTTGTCATGCCCGAGAGAA 99152 Query 1751 AACCTGT 1757 ||||||| Sbjct 99151 AACCTGT 99145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140354763138408