Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq222 98.7 1e-15
seq919 89.7 6e-13
seq412 84.2 3e-11
seq379 82.4 1e-10
>seq222
Length=596275
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381
|||||||| ||||| ||||| ||| |||| ||||| || ||||||| ||||||||| |||
Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858
Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441
|| || | ||||| || |||||| ||||| || | | ||||||||||||| ||
Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918
Query 190442 GC 190443
||
Sbjct 106919 GC 106920
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381
|||||||| ||||| ||||| ||| |||| ||||| || ||||||| ||||||||| |||
Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753
Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441
|| || | ||||| || |||||| ||||| || | | ||||||||||||| ||
Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693
Query 190442 GC 190443
||
Sbjct 179692 GC 179691
>seq919
Length=156708
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696
||| || || |||| |||||||||||||||| ||| || | | | | | | || |
Sbjct 153258 ACCCGTAACTATTCAATATCCTTATGAAAAATCAATCACCGCGGTGCGTTTCCGCGGTCG 153199
Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756
|| || | ||| ||||||||||||||||||||| |||||| || | || |||| |||
Sbjct 153198 AATCCATTTTGAATTTGATAAATGTATTGCTTGTTAAGTATACGTTCGTGTATGTCTTAT 153139
Query 188757 TAATTTACCTGTAGTTGATTGG 188778
|| |||| || |||||||||
Sbjct 153138 AGATCTACCCGTTGTTGATTGG 153117
>seq412
Length=403144
Score = 84.2 bits (92), Expect = 3e-11
Identities = 125/177 (71%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557
|| || || | | |||| || | || || || ||||||||| | || || ||| ||
Sbjct 101543 GTAAAGATTTGTAATACGTGTAGAGGGTGTACTCAATGTGTGTATGCCTGCCCAACAAAT 101602
Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617
||||||||| | | ||||||| || || ||||| ||||||||||| || || |||
Sbjct 101603 GTATTAGAAGTAATATCTTGGGACGGATGTAAAGCGAAGCAAATTGCCTC----CCAAGA 101658
Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTA 182674
| ||||| ||| | || |||||||||||| || |||||| || | || |||
Sbjct 101659 ATAGAGGACCATGTCAGTTGCAAGAGATGTGAATTTGCCTGTCCTGCAAATTTGTTA 101715
Score = 84.2 bits (92), Expect = 3e-11
Identities = 125/177 (71%), Gaps = 4/177 (2%)
Strand=Plus/Minus
Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557
|| || || | | |||| || | || || || ||||||||| | || || ||| ||
Sbjct 275518 GTAAAGATTTGTAATACGTGTAGAGGGTGTACTCAATGTGTGTATGCCTGCCCAACAAAT 275459
Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617
||||||||| | | ||||||| || || ||||| ||||||||||| || || |||
Sbjct 275458 GTATTAGAAGTAATATCTTGGGACGGATGTAAAGCGAAGCAAATTGCCTC----CCAAGA 275403
Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTA 182674
| ||||| ||| | || |||||||||||| || |||||| || | || |||
Sbjct 275402 ATAGAGGACCATGTCAGTTGCAAGAGATGTGAATTTGCCTGTCCTGCAAATTTGTTA 275346
>seq379
Length=432066
Score = 82.4 bits (90), Expect = 1e-10
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 184041 ATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTAT 184100
||||||||||| | |||| | | ||| || |||| || | ||||||||||
Sbjct 153477 ATGTATTAGATTATGTCCTTAGGCATCGGGATACAGTCATATCACATCTCAACTGGGTAT 153418
Query 184101 GCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAG 184155
| || |||||||| ||||| ||||||||| | |||||||| ||||||| ||||||
Sbjct 153417 GTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACTATGAG 153363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631409977823120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |