Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq222 98.7 1e-15 seq919 89.7 6e-13 seq412 84.2 3e-11 seq379 82.4 1e-10 >seq222 Length=596275 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381 |||||||| ||||| ||||| ||| |||| ||||| || ||||||| ||||||||| ||| Sbjct 106799 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 106858 Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441 || || | ||||| || |||||| ||||| || | | ||||||||||||| || Sbjct 106859 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 106918 Query 190442 GC 190443 || Sbjct 106919 GC 106920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381 |||||||| ||||| ||||| ||| |||| ||||| || ||||||| ||||||||| ||| Sbjct 179812 GGTTACAAATTTGGGCAAGAGGAAAAAACCTACAATATCGTAGCTGTTCATGGTTATTTT 179753 Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441 || || | ||||| || |||||| ||||| || | | ||||||||||||| || Sbjct 179752 GGCTGATTGATCTTTCAATATGCTAGTTTCAATAATTGTCGTTCTTTACACTTCTTCCTA 179693 Query 190442 GC 190443 || Sbjct 179692 GC 179691 >seq919 Length=156708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 ||| || || |||| |||||||||||||||| ||| || | | | | | | || | Sbjct 153258 ACCCGTAACTATTCAATATCCTTATGAAAAATCAATCACCGCGGTGCGTTTCCGCGGTCG 153199 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 || || | ||| ||||||||||||||||||||| |||||| || | || |||| ||| Sbjct 153198 AATCCATTTTGAATTTGATAAATGTATTGCTTGTTAAGTATACGTTCGTGTATGTCTTAT 153139 Query 188757 TAATTTACCTGTAGTTGATTGG 188778 || |||| || ||||||||| Sbjct 153138 AGATCTACCCGTTGTTGATTGG 153117 >seq412 Length=403144 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/177 (71%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557 || || || | | |||| || | || || || ||||||||| | || || ||| || Sbjct 101543 GTAAAGATTTGTAATACGTGTAGAGGGTGTACTCAATGTGTGTATGCCTGCCCAACAAAT 101602 Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617 ||||||||| | | ||||||| || || ||||| ||||||||||| || || ||| Sbjct 101603 GTATTAGAAGTAATATCTTGGGACGGATGTAAAGCGAAGCAAATTGCCTC----CCAAGA 101658 Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTA 182674 | ||||| ||| | || |||||||||||| || |||||| || | || ||| Sbjct 101659 ATAGAGGACCATGTCAGTTGCAAGAGATGTGAATTTGCCTGTCCTGCAAATTTGTTA 101715 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/177 (71%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557 || || || | | |||| || | || || || ||||||||| | || || ||| || Sbjct 275518 GTAAAGATTTGTAATACGTGTAGAGGGTGTACTCAATGTGTGTATGCCTGCCCAACAAAT 275459 Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA 182617 ||||||||| | | ||||||| || || ||||| ||||||||||| || || ||| Sbjct 275458 GTATTAGAAGTAATATCTTGGGACGGATGTAAAGCGAAGCAAATTGCCTC----CCAAGA 275403 Query 182618 ACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTA 182674 | ||||| ||| | || |||||||||||| || |||||| || | || ||| Sbjct 275402 ATAGAGGACCATGTCAGTTGCAAGAGATGTGAATTTGCCTGTCCTGCAAATTTGTTA 275346 >seq379 Length=432066 Score = 82.4 bits (90), Expect = 1e-10 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 184041 ATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTAT 184100 ||||||||||| | |||| | | ||| || |||| || | |||||||||| Sbjct 153477 ATGTATTAGATTATGTCCTTAGGCATCGGGATACAGTCATATCACATCTCAACTGGGTAT 153418 Query 184101 GCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAG 184155 | || |||||||| ||||| ||||||||| | |||||||| ||||||| |||||| Sbjct 153417 GTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACTATGAG 153363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631409977823120