Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_029099.1 Length=49797 Score E Sequences producing significant alignments: (Bits) Value seq768 161 3e-35 >seq768 Length=200800 Score = 161 bits (178), Expect = 3e-35 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 46664 GTATTTAGCTTCGAAAGTCGTTCCGTC--CGATACGCTGAAGCCGACCTCCTCGCGGTAC 46721 |||||| || || || || || || || |||||| | || |||| ||| ||||| | Sbjct 197113 GTATTTGGCCTCAAAGGTTGTGCCATCTGCGATAC--TAAAACCGATCTCTTCGCGAAAT 197170 Query 46722 AGCGTCCAGCGGAATCCGTCACGGTCGAATATGTAGCCAGCAACCGCACCGAGCGCACGA 46781 | ||||| ||| ||||||| || || ||||| ||||| || | ||||| || ||| Sbjct 197171 AATGTCCAACGGCATCCGTCCTCATCAAAGATGTAACCAGCTACGCCGCCGAGAGCGCGA 197230 Query 46782 CCGCTTTCGACCTGGTAGCGCTTGCCGACGCTGAAGGATTTTTTCATCGGGTTGCTATGG 46841 |||||||| |||||||| ||||| || || |||| ||||||||||||||||||| |||| Sbjct 197231 CCGCTTTCTACCTGGTAACGCTTTCCAACTTTGAATGATTTTTTCATCGGGTTGCGATGG 197290 Query 46842 TCAAGGCCGACGCATTTTAGCGTTTTGGTTTTGAGTTCGATGAACGTCGC 46891 ||||| ||| ||| |||||||| || ||||| | ||| |||| |||| Sbjct 197291 TCAAGTCCGGTGCACTTTAGCGTCTTTGTTTTCAACTCGGTGAATTTCGC 197340 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 7253 ATAGCACGAATTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCA- 7311 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785 Query 7312 ---AACCAATCAG 7321 |||||||||| Sbjct 3786 AGCAACCAATCAG 3798 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 7253 ATAGCACGAATTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCA- 7311 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963 Query 7312 ---AACCAATCAG 7321 |||||||||| Sbjct 53964 AGCAACCAATCAG 53976 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 7253 ATAGCACGAATTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCA- 7311 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415 Query 7312 ---AACCAATCAG 7321 |||||||||| Sbjct 104416 AGCAACCAATCAG 104428 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 7253 ATAGCACGAATTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCA- 7311 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761 Query 7312 ---AACCAATCAG 7321 |||||||||| Sbjct 154762 AGCAACCAATCAG 154774 Score = 95.1 bits (104), Expect = 4e-15 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 7241 ATTGCCTGCCAAATAGCACGAATTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCC 7300 ||| |||| ||||||||||| ||| ||| | | ||| |||| ||||||||| ||||||| Sbjct 197615 ATTCCCTGGTAAATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCC 197556 Query 7301 TTATTGAAGCAAACCAATCAGGAGCTAACAAGATGCAAATCC 7342 ||||| ||| |||||||||||||||| | ||| |||||| Sbjct 197555 TTATTCAAGATAACCAATCAGGAGCTAGCGCCATG-AAATCC 197515 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/91 (80%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 5769 AATAGCACTTTTTGTTAAAACTGCCGTAACGTCATTTGATAAAGTGGCGTTACTGAAGTG 5828 |||||||| |||||||| | |||||||| |||||||||||||||||| ||| | ||| Sbjct 197604 AATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCCTTATTCAAGAT 197545 Query 5829 AAACAATCCAATCAGGAGC-AACGCAATGAA 5858 || |||||||||||| | ||| ||||| Sbjct 197544 AA-----CCAATCAGGAGCTAGCGCCATGAA 197519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159224674182756