Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq819 93.3 3e-14 seq59 93.3 3e-14 seq15 93.3 3e-14 >seq819 Length=180711 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || | || || |||||| || Sbjct 9960 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 10019 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || ||||| |||||| |||| || | Sbjct 10020 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGACC 10077 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| || || | || |||| |||| | | |||| |||| Sbjct 10078 AGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACA 10137 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 10138 ACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTCCGTGGTGG 10186 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || | || || |||||| || Sbjct 178294 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 178235 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || ||||| |||||| |||| || | Sbjct 178234 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGACC 178177 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| || || | || |||| |||| | | |||| |||| Sbjct 178176 AGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACA 178117 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 178116 ACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTCCGTGGTGG 178068 >seq59 Length=1152742 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || | || || |||||| || Sbjct 893365 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 893306 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || ||||| |||||| |||| || | Sbjct 893305 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGACC 893248 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| || || | || |||| |||| | | |||| |||| Sbjct 893247 AGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACA 893188 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 893187 ACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTCCGTGGTGG 893139 >seq15 Length=1624393 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| || || | || ||||| ||| || Sbjct 1058068 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATAACTTTGGAGGTCGAGAGCTCC 1058009 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| |||| ||||| || || || || || || |||| ||| | Sbjct 1058008 GATACGATCGACAAC--GTCAAGGCCAAGATCCAAGATAAGGAGGGGATTCCTCCGGACC 1057951 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || |||||||| |||| |||| | | |||| |||| Sbjct 1057950 AGCAGAGGCTTATCTTCGCCGGCAAGCAATTGGAGGACGGTCGCACCCTAGCCGACTACA 1057891 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| |||||||| |||||| | || ||| | ||||| Sbjct 1057890 ACATCCAGAAGGAGTCGACTTTGCACTTGGTTCTTCGATTGAGAGGCGG 1057842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852936506714