Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq15 100 2e-16 seq580 93.3 4e-14 seq54 93.3 4e-14 seq146 86.0 5e-12 seq100 82.4 7e-11 >seq1 Length=4167794 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || || || ||||| || || ||||| |||| || Sbjct 1162850 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGCGAGGGTTCGGCCGTCTTC 1162909 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || ||||||||||||||||| | ||| | | || |||||| Sbjct 1162910 GAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTG 1162969 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||||| ||| | | | || ||| ||||| || || | ||||| | | Sbjct 1162970 GATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCT 1163028 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || ||||| || ||||||||||||| Sbjct 1163029 TTCCAGTAAGGGTTTTCACGAAGATTTGCATCT 1163061 >seq15 Length=1624393 Score = 100 bits (110), Expect = 2e-16 Identities = 175/250 (70%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || |||||| || || || | ||||| ||| ||||| || || Sbjct 1075728 TAACGAAAATCTG--CATGCCTCCCCTCAACCGAAGCACCAGATGGAGCGTCGATTCCTT 1075785 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| ||||| || || || || |||| || ||||| || || || || || | Sbjct 1075786 CTGGATATTGTAATCCGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAA 1075845 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCA 39217 ||||||||||||| || | || ||| |||||| ||| || |||| ||| | | | Sbjct 1075846 CCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCGA 1075904 Query 39218 CCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 |||||| ||| ||| || || | ||||| | || || ||||| ||||| || | Sbjct 1075905 TCGTATC---CGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGA 1075961 Query 39275 AGATTTGCAT 39284 |||| ||||| Sbjct 1075962 AGATCTGCAT 1075971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | ||||| || || || |||||| || |||||||||||||| Sbjct 1075289 CCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCGGCT 1075348 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || | ||| || || ||||| || || | ||||||||| | ||| Sbjct 1075349 AGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 1075408 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCC 39234 | | ||| || || ||| || |||| ||| | || || | ||| ||| Sbjct 1075409 ATTCCCTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCA--ATAGTGTCCGAGCTCTCG 1075465 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || || || ||||| || ||||| ||||| Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515 >seq580 Length=281551 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| ||||| || || || || ||||| ||||| | || || Sbjct 199604 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 199545 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || |||||| Sbjct 199544 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 199485 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 199484 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 199426 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || ||||||||||||| Sbjct 199425 TGCCGGTAAGAGTTTTCACGAAGATTTGCATCT 199393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||| || || || ||||| ||||| || || | || || Sbjct 199832 CACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCTTC 199773 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || ||||| Sbjct 199772 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTG 199713 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 199712 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 199654 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||||||||| ||||| Sbjct 199653 TGCCGGTGAGGGTCTTAACAAAGATCTGCAT 199623 >seq54 Length=1192742 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| ||||| || || || || ||||| ||||| | || || Sbjct 263255 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 263196 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || |||||| Sbjct 263195 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 263136 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 263135 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 263077 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || ||||||||||||| Sbjct 263076 TGCCGGTAAGAGTTTTCACGAAGATTTGCATCT 263044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||| || || || ||||| ||||| || || | || || Sbjct 263483 CACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCTTC 263424 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || ||||| Sbjct 263423 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTG 263364 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 263363 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 263305 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||||||||| ||||| Sbjct 263304 TGCCGGTGAGGGTCTTAACAAAGATCTGCAT 263274 >seq146 Length=786261 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 97622 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCC 97563 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || ||||| ||||| || || || || |||||||||| ||||||| | || ||| | Sbjct 97562 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCT 97504 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || || | | | | || ||| ||||| || || | || | Sbjct 97503 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTA 97444 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | | || ||||| || ||||| || ||||| ||||||||| Sbjct 97443 TCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 97403 >seq100 Length=933141 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || || ||||| || || | Sbjct 405026 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGGCC 404967 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 404966 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 404907 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | | | | || ||| ||||| || || | || || Sbjct 404906 GTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTAT 404847 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || ||||| || ||||| || ||||| ||||||||| Sbjct 404846 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 404807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534177040166