Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq15 100 2e-16
seq580 93.3 4e-14
seq54 93.3 4e-14
seq146 86.0 5e-12
seq100 82.4 7e-11
>seq1
Length=4167794
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || ||||| || || ||||| |||| ||
Sbjct 1162850 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCTGCGAGGGTTCGGCCGTCTTC 1162909
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || ||||||||||||||||| | ||| | | || ||||||
Sbjct 1162910 GAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTG 1162969
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || ||||| ||| | | | || ||| ||||| || || | ||||| | |
Sbjct 1162970 GATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCT 1163028
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||| || || ||||| || |||||||||||||
Sbjct 1163029 TTCCAGTAAGGGTTTTCACGAAGATTTGCATCT 1163061
>seq15
Length=1624393
Score = 100 bits (110), Expect = 2e-16
Identities = 175/250 (70%), Gaps = 10/250 (4%)
Strand=Plus/Plus
Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098
|||| ||||| | || |||||| || || || | ||||| ||| ||||| || ||
Sbjct 1075728 TAACGAAAATCTG--CATGCCTCCCCTCAACCGAAGCACCAGATGGAGCGTCGATTCCTT 1075785
Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158
|| ||||| ||||| || || || || |||| || ||||| || || || || || |
Sbjct 1075786 CTGGATATTGTAATCCGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAA 1075845
Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCA 39217
||||||||||||| || | || ||| |||||| ||| || |||| ||| | | |
Sbjct 1075846 CCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCGA 1075904
Query 39218 CCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274
|||||| ||| ||| || || | ||||| | || || ||||| ||||| || |
Sbjct 1075905 TCGTATC---CGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGA 1075961
Query 39275 AGATTTGCAT 39284
|||| |||||
Sbjct 1075962 AGATCTGCAT 1075971
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||||||||| || | ||||| || || || |||||| || ||||||||||||||
Sbjct 1075289 CCTCCTCTTAATCGCAGAACCAAGTGGAGGGTCGACTCTTTCTGAATATTATAATCGGCT 1075348
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| ||||| | || || | ||| || || ||||| || || | ||||||||| | |||
Sbjct 1075349 AGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 1075408
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCC 39234
| | ||| || || ||| || |||| ||| | || || | ||| |||
Sbjct 1075409 ATTCCCTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCA--ATAGTGTCCGAGCTCTCG 1075465
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||| || || | || || || || ||||| || ||||| |||||
Sbjct 1075466 ACTTCCAGAGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1075515
>seq580
Length=281551
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| ||||| || || || || ||||| ||||| | || ||
Sbjct 199604 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 199545
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | | || ||||||
Sbjct 199544 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 199485
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | || || |||||||| || | ||||| | |
Sbjct 199484 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 199426
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || || || ||||| || |||||||||||||
Sbjct 199425 TGCCGGTAAGAGTTTTCACGAAGATTTGCATCT 199393
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || |||||| || || || ||||| ||||| || || | || ||
Sbjct 199832 CACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCTTC 199773
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | | || |||||
Sbjct 199772 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTG 199713
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | || || |||||||| || | ||||| | |
Sbjct 199712 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 199654
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || ||||||||||| |||||
Sbjct 199653 TGCCGGTGAGGGTCTTAACAAAGATCTGCAT 199623
>seq54
Length=1192742
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| ||||| || || || || ||||| ||||| | || ||
Sbjct 263255 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTTCGGCCATCTTC 263196
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | | || ||||||
Sbjct 263195 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 263136
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | || || |||||||| || | ||||| | |
Sbjct 263135 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 263077
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || || || ||||| || |||||||||||||
Sbjct 263076 TGCCGGTAAGAGTTTTCACGAAGATTTGCATCT 263044
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || |||||| || || || ||||| ||||| || || | || ||
Sbjct 263483 CACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCTTC 263424
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | | || |||||
Sbjct 263423 GAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTG 263364
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | || || |||||||| || | ||||| | |
Sbjct 263363 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCGAGGGTGATGGTCT 263305
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || ||||||||||| |||||
Sbjct 263304 TGCCGGTGAGGGTCTTAACAAAGATCTGCAT 263274
>seq146
Length=786261
Score = 86.0 bits (94), Expect = 5e-12
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||||| || || || |
Sbjct 97622 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCC 97563
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187
||| || ||||| ||||| || || || || |||||||||| ||||||| | || ||| |
Sbjct 97562 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCT 97504
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
||||| ||| || || | | | | || ||| ||||| || || | || |
Sbjct 97503 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTA 97444
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
| | || ||||| || ||||| || ||||| |||||||||
Sbjct 97443 TCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 97403
>seq100
Length=933141
Score = 82.4 bits (90), Expect = 7e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || || ||||| || || |
Sbjct 405026 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGGCC 404967
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||| | || | || ||| ||
Sbjct 404966 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 404907
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || || | | | | || ||| ||||| || || | || ||
Sbjct 404906 GTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTAT 404847
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
| || ||||| || ||||| || ||||| |||||||||
Sbjct 404846 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 404807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429534177040166
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