Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq819 116 3e-21
seq59 116 3e-21
seq687 102 6e-17
seq1 98.7 7e-16
seq1309 96.9 2e-15
seq139 96.9 2e-15
seq15 95.1 8e-15
seq580 91.5 1e-13
seq54 91.5 1e-13
seq215 89.7 3e-13
>seq819
Length=180711
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 9960 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 10019
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| ||
Sbjct 10020 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 10078
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | |||||||||||||| || || || |||| ||||| | | ||| |||||
Sbjct 10079 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 10138
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 10139 CATCCAGAAGGAGTCCAC 10156
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 178294 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 178235
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| ||
Sbjct 178234 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 178176
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | |||||||||||||| || || || |||| ||||| | | ||| |||||
Sbjct 178175 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 178116
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 178115 CATCCAGAAGGAGTCCAC 178098
>seq59
Length=1152742
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 893365 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 893306
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| ||
Sbjct 893305 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 893247
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | |||||||||||||| || || || |||| ||||| | | ||| |||||
Sbjct 893246 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 893187
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 893186 CATCCAGAAGGAGTCCAC 893169
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| ||||| ||||| | |
Sbjct 730369 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 730428
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| | || || ||||| || || | || ||||| ||
Sbjct 730429 GACACTATTGATAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 730487
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || ||||| ||||| || || || || | ||||| | | ||| |||||
Sbjct 730488 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAA 730547
Query 23790 CATACAAAAAGAGTCCAC 23807
|||||| || ||||||||
Sbjct 730548 CATACAGAAGGAGTCCAC 730565
>seq687
Length=229775
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| ||||| ||||| | |
Sbjct 52888 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 52947
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| | || || ||||| || || | || ||||| ||
Sbjct 52948 GACACTATTGATAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 53006
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || ||||| ||||| || || || || | ||||| | | ||| |||||
Sbjct 53007 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAA 53066
Query 23790 CATACAAAAAGAGTCCAC 23807
|||||| || ||||||||
Sbjct 53067 CATACAGAAGGAGTCCAC 53084
>seq1
Length=4167794
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| |||||||| || ||||| || ||||| ||||| || || || |
Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | ||| || || ||||| ||||| | || ||||| ||
Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || ||||| || || || ||||||| || || | | |||||||||
Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 1162879 ATCCAGAAGGAGTCAAC 1162863
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || ||||| || || || || ||||| || || ||||| | ||
Sbjct 1162375 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGAGCTCG 1162316
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| |||| | || || ||||| || || | || || || ||
Sbjct 1162315 GACACCATCGACAATGTTAAGGC-CAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 1162257
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| || || || || || | |||||||| | || |||||
Sbjct 1162256 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 1162197
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1162196 CATCCAGAAGGAGTCGAC 1162179
>seq1309
Length=78448
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
|| || |||||||||||||| |||||||| || || || || ||||| ||||| || ||
Sbjct 62518 CTAAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAG 62459
Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
|| ||||| |||| ||| | || | || || ||||| || || | |||||
Sbjct 62458 AGCAGCGACACCATTGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCC 62400
Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783
|| || ||||| | || || |||||||| || || ||||||| ||||| | | ||
Sbjct 62399 GGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCTGA 62340
Query 23784 TTACAACATACAAAAAG 23800
|||||||| || ||||
Sbjct 62339 CTACAACATCCAGAAAG 62323
>seq139
Length=803459
Score = 96.9 bits (106), Expect = 2e-15
Identities = 142/197 (72%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 23604 ACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662
||||||| |||||||||||||| |||||||| || || || || ||||||||||| || |
Sbjct 752090 ACTTAAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCG 752031
Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721
| || ||||| | || ||| | || | || || ||||| || || | |||
Sbjct 752030 AGAGCAGCGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCG 751972
Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781
|| || || ||||| | || || |||||||| || || ||||||| ||||| | |
Sbjct 751971 CCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCT 751912
Query 23782 GATTACAACATACAAAA 23798
|| |||||||| || ||
Sbjct 751911 GACTACAACATCCAGAA 751895
>seq15
Length=1624393
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || || |||||||||||||| ||||| | |
Sbjct 1057383 ATGCAGATATTTGTGAAGACACTGACAGGGAAGACGATCACTCTCGAGGTTGAGAGCTCT 1057324
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| | || | || ||||| || || | || || || ||
Sbjct 1057323 GACACTATTGACAATGTCAAAGCTAAGA-TTCAGGACAAGGAGGGGATCCCACCTGACCA 1057265
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || || || ||||| || || || | || || | | ||||||||
Sbjct 1057264 GCAGAGGTTGATCTTCGCTGGGAAACAGCTAGAGGATGGTCGTACCCTTGCGGATTACAA 1057205
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || |||||||| || | ||| | |||
Sbjct 1057204 CATTCAGAAAGAGTCTACCCTCCATCTCGTT 1057174
Score = 84.2 bits (92), Expect = 1e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || |||||||| ||||| || || || |||||||| || || | |
Sbjct 1075287 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATTACTCTCGAGGTCGAGAGCTCT 1075228
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | || || || || | || ||||| |
Sbjct 1075227 GATACCATCGATAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGAATCCCACCAGACTA 1075169
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || || || || ||| |||| |||| | | || || | ||||||||
Sbjct 1075168 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACATTGGCGGATTACAA 1075109
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| ||||| || || || || ||
Sbjct 1075108 CATCCAAAAGGAGTCTACTTTGCACTTGGT 1075079
>seq580
Length=281551
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || ||||| |||||||| || || || ||||| ||||| || || || |
Sbjct 199622 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 199681
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || || || ||||| ||||| | || ||||| ||
Sbjct 199682 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 199741
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || || || || || ||||| | || || | | ||||||||
Sbjct 199742 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 199801
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 199802 CATCCAGAAAGAGTCAAC 199819
>seq54
Length=1192742
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || ||||| |||||||| || || || ||||| ||||| || || || |
Sbjct 263273 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 263332
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || || || ||||| ||||| | || ||||| ||
Sbjct 263333 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 263392
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || || || || || ||||| | || || | | ||||||||
Sbjct 263393 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 263452
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 263453 CATCCAGAAAGAGTCAAC 263470
>seq215
Length=606900
Score = 89.7 bits (98), Expect = 3e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| |||||||| || || || || |||||||| || || || ||
Sbjct 55795 ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTTGAGGTCGAGAGCAGC 55736
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || | || || ||||| || || | || || || ||
Sbjct 55735 GACACTATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 55677
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || || |||||||| || || ||||||| || || ||| || |||||
Sbjct 55676 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGAACCCTAGCTGACTACAA 55617
Query 23790 CATACAAAAAG 23800
||| || ||||
Sbjct 55616 CATCCAGAAAG 55606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338000611268456
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