Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq819 116 3e-21 seq59 116 3e-21 seq687 102 6e-17 seq1 98.7 7e-16 seq1309 96.9 2e-15 seq139 96.9 2e-15 seq15 95.1 8e-15 seq580 91.5 1e-13 seq54 91.5 1e-13 seq215 89.7 3e-13 >seq819 Length=180711 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | | Sbjct 9960 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 10019 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| || Sbjct 10020 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 10078 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | |||||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 10079 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 10138 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 10139 CATCCAGAAGGAGTCCAC 10156 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | | Sbjct 178294 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 178235 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| || Sbjct 178234 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 178176 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | |||||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 178175 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 178116 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 178115 CATCCAGAAGGAGTCCAC 178098 >seq59 Length=1152742 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || ||||| || ||||| ||||| ||||| | | Sbjct 893365 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCC 893306 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| |||||| | || ||||| || Sbjct 893305 GACACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGTATTCCCCCAGACCA 893247 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | |||||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 893246 GCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 893187 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 893186 CATCCAGAAGGAGTCCAC 893169 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 730369 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 730428 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || || ||||| || || | || ||||| || Sbjct 730429 GACACTATTGATAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 730487 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || || | ||||| | | ||| ||||| Sbjct 730488 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAA 730547 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 730548 CATACAGAAGGAGTCCAC 730565 >seq687 Length=229775 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 52888 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 52947 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || || ||||| || || | || ||||| || Sbjct 52948 GACACTATTGATAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 53006 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || || | ||||| | | ||| ||||| Sbjct 53007 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAA 53066 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 53067 CATACAGAAGGAGTCCAC 53084 >seq1 Length=4167794 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || ||||| || ||||| ||||| || || || | Sbjct 1163059 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACCCTCGAGGTCGAGTCTTCC 1163000 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| ||||| | || ||||| || Sbjct 1162999 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1162940 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || ||||||| || || | | ||||||||| Sbjct 1162939 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGATTACAAC 1162880 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1162879 ATCCAGAAGGAGTCAAC 1162863 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| || || ||||| | || Sbjct 1162375 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGAGCTCG 1162316 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| || || | || || || || Sbjct 1162315 GACACCATCGACAATGTTAAGGC-CAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 1162257 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | |||||||| | || ||||| Sbjct 1162256 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACAA 1162197 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1162196 CATCCAGAAGGAGTCGAC 1162179 >seq1309 Length=78448 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || || |||||||||||||| |||||||| || || || || ||||| ||||| || || Sbjct 62518 CTAAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAG 62459 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || ||||| |||| ||| | || | || || ||||| || || | ||||| Sbjct 62458 AGCAGCGACACCATTGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCC 62400 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 || || ||||| | || || |||||||| || || ||||||| ||||| | | || Sbjct 62399 GGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCTGA 62340 Query 23784 TTACAACATACAAAAAG 23800 |||||||| || |||| Sbjct 62339 CTACAACATCCAGAAAG 62323 >seq139 Length=803459 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 23604 ACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 ||||||| |||||||||||||| |||||||| || || || || ||||||||||| || | Sbjct 752090 ACTTAAAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCG 752031 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | || ||||| | || ||| | || | || || ||||| || || | ||| Sbjct 752030 AGAGCAGCGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCG 751972 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 || || || ||||| | || || |||||||| || || ||||||| ||||| | | Sbjct 751971 CCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCT 751912 Query 23782 GATTACAACATACAAAA 23798 || |||||||| || || Sbjct 751911 GACTACAACATCCAGAA 751895 >seq15 Length=1624393 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||||||||| ||||| | | Sbjct 1057383 ATGCAGATATTTGTGAAGACACTGACAGGGAAGACGATCACTCTCGAGGTTGAGAGCTCT 1057324 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || ||||| || || | || || || || Sbjct 1057323 GACACTATTGACAATGTCAAAGCTAAGA-TTCAGGACAAGGAGGGGATCCCACCTGACCA 1057265 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || ||||| || || || | || || | | |||||||| Sbjct 1057264 GCAGAGGTTGATCTTCGCTGGGAAACAGCTAGAGGATGGTCGTACCCTTGCGGATTACAA 1057205 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| || | ||| | ||| Sbjct 1057204 CATTCAGAAAGAGTCTACCCTCCATCTCGTT 1057174 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| ||||| || || || |||||||| || || | | Sbjct 1075287 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATTACTCTCGAGGTCGAGAGCTCT 1075228 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | || || || || | || ||||| | Sbjct 1075227 GATACCATCGATAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGAATCCCACCAGACTA 1075169 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || ||| |||| |||| | | || || | |||||||| Sbjct 1075168 GCAGAGATTGATTTTCGCTGGTAAGCAATTGGAGGACGGAAGGACATTGGCGGATTACAA 1075109 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| || || || || || Sbjct 1075108 CATCCAAAAGGAGTCTACTTTGCACTTGGT 1075079 >seq580 Length=281551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| |||||||| || || || ||||| ||||| || || || | Sbjct 199622 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 199681 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 199682 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 199741 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || ||||| | || || | | |||||||| Sbjct 199742 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 199801 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 199802 CATCCAGAAAGAGTCAAC 199819 >seq54 Length=1192742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| |||||||| || || || ||||| ||||| || || || | Sbjct 263273 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 263332 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 263333 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 263392 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || ||||| | || || | | |||||||| Sbjct 263393 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCGGATTACAA 263452 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 263453 CATCCAGAAAGAGTCAAC 263470 >seq215 Length=606900 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || || || |||||||| || || || || Sbjct 55795 ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTTGAGGTCGAGAGCAGC 55736 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 55735 GACACTATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 55677 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || ||||||| || || ||| || ||||| Sbjct 55676 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGAACCCTAGCTGACTACAA 55617 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 55616 CATCCAGAAAG 55606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000611268456