Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq202 120 3e-22 seq1330 116 3e-21 seq801 116 3e-21 >seq202 Length=624202 Score = 120 bits (132), Expect = 3e-22 Identities = 237/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||| ||||| || || || Sbjct 31372 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 31430 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 31431 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 31490 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| ||||| | ||| | |||| || || | | | Sbjct 31491 GAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 31547 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 31548 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGC 31607 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 31608 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 31667 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889 ||| || || || || || || || || ||||| || ||||| ||| Sbjct 31668 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 31713 >seq1330 Length=73179 Score = 116 bits (128), Expect = 3e-21 Identities = 405/622 (65%), Gaps = 9/622 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||| ||||| || || || Sbjct 26765 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 26707 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 26706 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 26647 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| || || | ||| | |||| || || | | | Sbjct 26646 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 26590 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 26589 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 26530 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 26529 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 26470 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || || || || || || || || ||||| || ||||| ||| | || || | Sbjct 26469 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 26410 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || || || || || ||| || | | | ||||| || || || || ||| Sbjct 26409 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 26350 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022 || || || || | || || || | |||| | ||| | | | | || || || Sbjct 26349 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 26291 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||||| | | || | || || || || || | ||||| || || || || || | Sbjct 26290 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 26231 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141 | |||||||| ||| || || || ||||| ||||||| || ||| || | || | Sbjct 26230 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 26172 Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163 ||||| | || ||||| |||| Sbjct 26171 TTAGGAGCTAGCAGCGGCTCTT 26150 Score = 116 bits (128), Expect = 3e-21 Identities = 405/622 (65%), Gaps = 9/622 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||| ||||| || || || Sbjct 46415 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 46473 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 46474 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 46533 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| || || | ||| | |||| || || | | | Sbjct 46534 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 46590 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 46591 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 46650 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 46651 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 46710 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || || || || || || || || ||||| || ||||| ||| | || || | Sbjct 46711 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 46770 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || || || || || ||| || | | | ||||| || || || || ||| Sbjct 46771 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 46830 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022 || || || || | || || || | |||| | ||| | | | | || || || Sbjct 46831 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 46889 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||||| | | || | || || || || || | ||||| || || || || || | Sbjct 46890 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 46949 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141 | |||||||| ||| || || || ||||| ||||||| || ||| || | || | Sbjct 46950 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 47008 Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163 ||||| | || ||||| |||| Sbjct 47009 TTAGGAGCTAGCAGCGGCTCTT 47030 >seq801 Length=188201 Score = 116 bits (128), Expect = 3e-21 Identities = 405/622 (65%), Gaps = 9/622 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| || || || ||||| || ||||||| || | ||||| ||||| || || || Sbjct 11766 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 11708 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||||||||| | |||||||||||||||||| ||| || ||| || || Sbjct 11707 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 11648 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| |||||| || || | ||| | |||| || || | | | Sbjct 11647 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 11591 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||| | | ||||| | || || ||| ||||| || || |||| || || Sbjct 11590 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 11531 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || | || || | ||| | || || || || | || ||||| || Sbjct 11530 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 11471 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || || || || || || || || ||||| || ||||| ||| | || || | Sbjct 11470 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 11411 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || || || || || ||| || | | | ||||| || || || || ||| Sbjct 11410 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 11351 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022 || || || || | || || || | |||| | ||| | | | | || || || Sbjct 11350 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 11292 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||||| | | || | || || || || || | ||||| || || || || || | Sbjct 11291 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 11232 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141 | |||||||| ||| || || || ||||| ||||||| || ||| || | || | Sbjct 11231 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 11173 Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163 ||||| | || ||||| |||| Sbjct 11172 TTAGGAGCTAGCAGCGGCTCTT 11151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038243416606