Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq202 120 3e-22
seq1330 116 3e-21
seq801 116 3e-21
>seq202
Length=624202
Score = 120 bits (132), Expect = 3e-22
Identities = 237/346 (68%), Gaps = 5/346 (1%)
Strand=Plus/Plus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603
|||||||| || || || ||||| || ||||||| || | ||||| ||||| || || ||
Sbjct 31372 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 31430
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| ||| ||||||||||| | |||||||||||||||||| ||| || ||| || ||
Sbjct 31431 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 31490
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||| || || || ||| |||||| ||||| | ||| | |||| || || | | |
Sbjct 31491 GAAAATCCCCTCCACGCAGGCAAAGGCTACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 31547
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
| |||||| | | ||||| | || || ||| ||||| || || |||| || ||
Sbjct 31548 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGATGGTGTCGATCGC 31607
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| || | || || | ||| | || || || || | || ||||| ||
Sbjct 31608 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 31667
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAG 4889
||| || || || || || || || || ||||| || ||||| |||
Sbjct 31668 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 31713
>seq1330
Length=73179
Score = 116 bits (128), Expect = 3e-21
Identities = 405/622 (65%), Gaps = 9/622 (1%)
Strand=Plus/Minus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603
|||||||| || || || ||||| || ||||||| || | ||||| ||||| || || ||
Sbjct 26765 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 26707
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| ||| ||||||||||| | |||||||||||||||||| ||| || ||| || ||
Sbjct 26706 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 26647
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||| || || || ||| |||||| || || | ||| | |||| || || | | |
Sbjct 26646 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 26590
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
| |||||| | | ||||| | || || ||| ||||| || || |||| || ||
Sbjct 26589 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 26530
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| || | || || | ||| | || || || || | || ||||| ||
Sbjct 26529 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 26470
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
||| || || || || || || || || ||||| || ||||| ||| | || || |
Sbjct 26469 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 26410
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
|| || || || || ||| || | | | ||||| || || || || |||
Sbjct 26409 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 26350
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022
|| || || || | || || || | |||| | ||| | | | | || || ||
Sbjct 26349 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 26291
Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082
||||| | | || | || || || || || | ||||| || || || || || |
Sbjct 26290 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 26231
Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141
| |||||||| ||| || || || ||||| ||||||| || ||| || | || |
Sbjct 26230 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 26172
Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163
||||| | || ||||| ||||
Sbjct 26171 TTAGGAGCTAGCAGCGGCTCTT 26150
Score = 116 bits (128), Expect = 3e-21
Identities = 405/622 (65%), Gaps = 9/622 (1%)
Strand=Plus/Plus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603
|||||||| || || || ||||| || ||||||| || | ||||| ||||| || || ||
Sbjct 46415 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 46473
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| ||| ||||||||||| | |||||||||||||||||| ||| || ||| || ||
Sbjct 46474 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 46533
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||| || || || ||| |||||| || || | ||| | |||| || || | | |
Sbjct 46534 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 46590
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
| |||||| | | ||||| | || || ||| ||||| || || |||| || ||
Sbjct 46591 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 46650
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| || | || || | ||| | || || || || | || ||||| ||
Sbjct 46651 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 46710
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
||| || || || || || || || || ||||| || ||||| ||| | || || |
Sbjct 46711 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 46770
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
|| || || || || ||| || | | | ||||| || || || || |||
Sbjct 46771 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 46830
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022
|| || || || | || || || | |||| | ||| | | | | || || ||
Sbjct 46831 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 46889
Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082
||||| | | || | || || || || || | ||||| || || || || || |
Sbjct 46890 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 46949
Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141
| |||||||| ||| || || || ||||| ||||||| || ||| || | || |
Sbjct 46950 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 47008
Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163
||||| | || ||||| ||||
Sbjct 47009 TTAGGAGCTAGCAGCGGCTCTT 47030
>seq801
Length=188201
Score = 116 bits (128), Expect = 3e-21
Identities = 405/622 (65%), Gaps = 9/622 (1%)
Strand=Plus/Minus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603
|||||||| || || || ||||| || ||||||| || | ||||| ||||| || || ||
Sbjct 11766 AAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTC-GCGAGATCAGCTCGTTGGAGAAAGT 11708
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| ||| ||||||||||| | |||||||||||||||||| ||| || ||| || ||
Sbjct 11707 CAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAA 11648
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||| || || || ||| |||||| || || | ||| | |||| || || | | |
Sbjct 11647 GAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CT--CGGAGCC 11591
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
| |||||| | | ||||| | || || ||| ||||| || || |||| || ||
Sbjct 11590 GTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 11531
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| || | || || | ||| | || || || || | || ||||| ||
Sbjct 11530 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 11471
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
||| || || || || || || || || ||||| || ||||| ||| | || || |
Sbjct 11470 CATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 11411
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
|| || || || || ||| || | | | ||||| || || || || |||
Sbjct 11410 GACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACGATGCCATCGGAGGC 11351
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCC 5022
|| || || || | || || || | |||| | ||| | | | | || || ||
Sbjct 11350 AGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCG-CCGTCGGATAGGGCTTCCC 11292
Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082
||||| | | || | || || || || || | ||||| || || || || || |
Sbjct 11291 AGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGATGCCTCGGCCT 11232
Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141
| |||||||| ||| || || || ||||| ||||||| || ||| || | || |
Sbjct 11231 TCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACAT-ACAGAAGCGGTCCGGG 11173
Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163
||||| | || ||||| ||||
Sbjct 11172 TTAGGAGCTAGCAGCGGCTCTT 11151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427038243416606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |