Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_031026.1 Length=49167 Score E Sequences producing significant alignments: (Bits) Value seq768 174 5e-39 seq2064 80.6 8e-11 >seq768 Length=200800 Score = 174 bits (192), Expect = 5e-39 Identities = 388/568 (68%), Gaps = 16/568 (3%) Strand=Plus/Plus Query 41204 TTTGTATCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCA 41263 ||| | || ||||| ||||| ||| | ||||| ||||||||||| || | ||| ||| Sbjct 48815 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 48874 Query 41264 TCGCGAGCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 41321 ||||| | | ||| | || |||| | || || ||||| || || | | || | Sbjct 48875 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 48932 Query 41322 CTCCAAACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACAC 41381 | || || | || |||| ||| || |||| | |||| |||||||| || | Sbjct 48933 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 48992 Query 41382 TAACAGGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCT 41441 | || ||||||||||| ||||| | || || | || |||| || ||||| ||| Sbjct 48993 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 49052 Query 41442 TTGCCGTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTGCAAAGT 41501 || || |||| ||||| | |||||| ||||||||||||||||| ||||||| Sbjct 49053 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 49112 Query 41502 GACGCGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAG 41561 |||| | || |||||||| | ||||||||||||||||| || ||||||||||| || Sbjct 49113 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 49172 Query 41562 TGCCAAAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAA 41620 ||||| | || | | || |||| | | | ||| | | || | || | | |||| | Sbjct 49173 TGCCATACACACCCGCGATCGCGTCACGTTCGAACTTCTCAT-CAATAAAGACGTTCACA 49231 Query 41621 TAAACTATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCA 41674 || | ||||| ||||| ||| | || || ||| ||||| || ||||| || Sbjct 49232 TACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGCC 49291 Query 41675 CCGTCGAAATTAAAGCACAGCACTTTGTGACCACGTTCAGCCCACGGCA--ACGCAGCAT 41732 ||||| || || ||||||| ||| || ||||| | | | ||| || || ||||| Sbjct 49292 CCGTCAAAGTTGAAGCACATCACCTTATGACCTTGCTTTG-CCAGTTCATGAC-CAGCAA 49349 Query 41733 AACCAGAACCATCAAATAGTGAGAAAAT 41760 ||| ||||| || |||||||| |||| Sbjct 49350 GACCGGAACCGTCGAATAGTGACCAAAT 49377 Score = 174 bits (192), Expect = 5e-39 Identities = 388/568 (68%), Gaps = 16/568 (3%) Strand=Plus/Plus Query 41204 TTTGTATCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCA 41263 ||| | || ||||| ||||| ||| | ||||| ||||||||||| || | ||| ||| Sbjct 99151 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 99210 Query 41264 TCGCGAGCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 41321 ||||| | | ||| | || |||| | || || ||||| || || | | || | Sbjct 99211 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 99268 Query 41322 CTCCAAACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACAC 41381 | || || | || |||| ||| || |||| | |||| |||||||| || | Sbjct 99269 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 99328 Query 41382 TAACAGGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCT 41441 | || ||||||||||| ||||| | || || | || |||| || ||||| ||| Sbjct 99329 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 99388 Query 41442 TTGCCGTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTGCAAAGT 41501 || || |||| ||||| | |||||| ||||||||||||||||| ||||||| Sbjct 99389 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 99448 Query 41502 GACGCGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAG 41561 |||| | || |||||||| | ||||||||||||||||| || ||||||||||| || Sbjct 99449 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 99508 Query 41562 TGCCAAAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAA 41620 ||||| | || | | || |||| | | | ||| | | || | || | | |||| | Sbjct 99509 TGCCATACACACCCGCGATCGCGTCACGTTCGAACTTCTCAT-CAATAAAGACGTTCACA 99567 Query 41621 TAAACTATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCA 41674 || | ||||| ||||| ||| | || || ||| ||||| || ||||| || Sbjct 99568 TACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGCC 99627 Query 41675 CCGTCGAAATTAAAGCACAGCACTTTGTGACCACGTTCAGCCCACGGCA--ACGCAGCAT 41732 ||||| || || ||||||| ||| || ||||| | | | ||| || || ||||| Sbjct 99628 CCGTCAAAGTTGAAGCACATCACCTTATGACCTTGCTTTG-CCAGTTCATGAC-CAGCAA 99685 Query 41733 AACCAGAACCATCAAATAGTGAGAAAAT 41760 ||| ||||| || |||||||| |||| Sbjct 99686 GACCGGAACCGTCGAATAGTGACCAAAT 99713 Score = 161 bits (178), Expect = 3e-35 Identities = 348/507 (69%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 41210 TCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCATCGCGA 41269 || ||||| |||||| ||| |||||||||||||||||| || | ||| |||||||| Sbjct 199822 TCTGGCATGACAAAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGGTAAGCATCGCGC 199881 Query 41270 GCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCTCCAA 41327 | | ||| | || |||| | || ||| |||| || || | | || || ||| Sbjct 199882 GGCGCAATATACATCGGGAACCAGGGG-TGTGCGTCATTCTCAGGAAGATAG-CCGCCAT 199939 Query 41328 ACGCGCAAGGAT-GAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACACTAACA 41386 || | || |||| ||||| | |||| | ||||| ||| ||||| || ||||| Sbjct 199940 ACTCCCAGGGATTGAAAG-TGTGGTCAGCCTTTCGCCAGGCTGATGACAGGACGCTAACC 199998 Query 41387 GGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCC 41446 ||||||||||| ||||| | || | | ||| | || || || |||||| || Sbjct 199999 GGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGCGGCAATCCGGGCG 200058 Query 41447 GTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCT-GCAAAGTGACG 41505 || |||| || || | |||||| |||||||||| |||| ||||| |||||||| || Sbjct 200059 GTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGC-TTGCTGGCAAAGTGTCG 200117 Query 41506 CGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAGTGCC 41565 | || ||||| || | |||||||| || ||||| || ||||| ||||| || |||| Sbjct 200118 AGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAAATCCGGCTTGCC 200177 Query 41566 AAAGACGCGCATCATTGCGTTATGCTGGAATGATAATCCGATCCACTCATTCAAATAAAC 41625 | | || | | || || | | | | ||| | | | || || | |||| ||| | Sbjct 200178 ATACACACCCGCGATCGCATCACGTTCGAACGTTTCATCAATGAACACGTTCACATACTC 200237 Query 41626 TATGTTGGGATG--AGTCACGCGCACTG---ATTG-GTAATCACCATGATCAGCACCGTC 41679 ||||||||||| | || ||| || ||| ||||| || ||||| || ||||| Sbjct 200238 AATGTTGGGATGCTCTACCCGGGCATTGTACTTTGCATAATCTCCGTGATCGGCTCCGTC 200297 Query 41680 GAAATTAAAGCACAGCACTTTGTGACC 41706 || || ||||||| |||||| ||||| Sbjct 200298 AAAGTTGAAGCACATCACTTTATGACC 200324 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632 |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785 Query 633 AGCAACCAATCAGAGGAATAAACGATG 659 ||||||||||||||||||| | | ||| Sbjct 3786 AGCAACCAATCAGAGGAATCAGCTATG 3812 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632 |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963 Query 633 AGCAACCAATCAGAGGAATAAACGATG 659 ||||||||||||||||||| | | ||| Sbjct 53964 AGCAACCAATCAGAGGAATCAGCTATG 53990 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632 |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415 Query 633 AGCAACCAATCAGAGGAATAAACGATG 659 ||||||||||||||||||| | | ||| Sbjct 104416 AGCAACCAATCAGAGGAATCAGCTATG 104442 Score = 116 bits (128), Expect = 1e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632 |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761 Query 633 AGCAACCAATCAGAGGAATAAACGATG 659 ||||||||||||||||||| | | ||| Sbjct 154762 AGCAACCAATCAGAGGAATCAGCTATG 154788 Score = 95.1 bits (104), Expect = 4e-15 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 46025 GCAAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAA 46084 ||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||| Sbjct 199703 GCAAATAGCACTTTTTGTTAAAACTCGATCGGTGCGATTTGGCATAATTACCTCATCGAA 199644 Query 46085 ACGA-AACGAGG-AAAACACAATG 46106 |||| | |||| |||||| |||| Sbjct 199643 ACGAGATTGAGGAAAAACAAAATG 199620 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 38153 TGTTTTCCTTTTGTT-GCTACGTTTCGTTAAAACAAATATACCCGATACAAGATCGGGTG 38211 || ||||||| | | ||| ||||||| | ||||||||||||||||||| ||||| |||| Sbjct 94198 TGCTTTCCTTCGGGTCGCTTCGTTTCGATGAAACAAATATACCCGATACGAGATCTGGTG 94257 Query 38212 TTTTAACAAAAAGTGC 38227 |||||||||||||||| Sbjct 94258 TTTTAACAAAAAGTGC 94273 Score = 87.8 bits (96), Expect = 6e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 46027 AAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAAAC 46086 |||||||| |||||||||||||||||| || || |||| |||||||||| ||||||||| Sbjct 48700 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 48641 Query 46087 GA-AACGAGG-AAAACACAATG 46106 || | |||| |||||| |||| Sbjct 48640 GAGATTGAGGAAAAACAAAATG 48619 Score = 87.8 bits (96), Expect = 6e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 46027 AAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAAAC 46086 |||||||| |||||||||||||||||| || || |||| |||||||||| ||||||||| Sbjct 99036 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 98977 Query 46087 GA-AACGAGG-AAAACACAATG 46106 || | |||| |||||| |||| Sbjct 98976 GAGATTGAGGAAAAACAAAATG 98955 >seq2064 Length=2442 Score = 80.6 bits (88), Expect = 8e-11 Identities = 69/86 (80%), Gaps = 7/86 (8%) Strand=Plus/Minus Query 43967 CATCGTTAATCTCCTGATTGGT-------TTCGATGGGGTAACTATATCAAGTTACCCCG 44019 ||| || |||| ||||||||| |||||||||||||||||| |||| ||||||| Sbjct 1509 CATGGTGAATCCTCTGATTGGTATCTCGTTTCGATGGGGTAACTATAGCAAGATACCCCG 1450 Query 44020 ATCCTTTTTTAGCAATTCGTGCTATT 44045 ||| ||||| |||||||||||||| Sbjct 1449 TCCCTGTTTTAACAATTCGTGCTATT 1424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157208726419836