Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_031026.1
Length=49167
Score E
Sequences producing significant alignments: (Bits) Value
seq768 174 5e-39
seq2064 80.6 8e-11
>seq768
Length=200800
Score = 174 bits (192), Expect = 5e-39
Identities = 388/568 (68%), Gaps = 16/568 (3%)
Strand=Plus/Plus
Query 41204 TTTGTATCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCA 41263
||| | || ||||| ||||| ||| | ||||| ||||||||||| || | ||| |||
Sbjct 48815 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 48874
Query 41264 TCGCGAGCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 41321
||||| | | ||| | || |||| | || || ||||| || || | | || |
Sbjct 48875 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 48932
Query 41322 CTCCAAACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACAC 41381
| || || | || |||| ||| || |||| | |||| |||||||| || |
Sbjct 48933 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 48992
Query 41382 TAACAGGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCT 41441
| || ||||||||||| ||||| | || || | || |||| || ||||| |||
Sbjct 48993 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 49052
Query 41442 TTGCCGTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTGCAAAGT 41501
|| || |||| ||||| | |||||| ||||||||||||||||| |||||||
Sbjct 49053 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 49112
Query 41502 GACGCGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAG 41561
|||| | || |||||||| | ||||||||||||||||| || ||||||||||| ||
Sbjct 49113 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 49172
Query 41562 TGCCAAAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAA 41620
||||| | || | | || |||| | | | ||| | | || | || | | |||| |
Sbjct 49173 TGCCATACACACCCGCGATCGCGTCACGTTCGAACTTCTCAT-CAATAAAGACGTTCACA 49231
Query 41621 TAAACTATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCA 41674
|| | ||||| ||||| ||| | || || ||| ||||| || ||||| ||
Sbjct 49232 TACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGCC 49291
Query 41675 CCGTCGAAATTAAAGCACAGCACTTTGTGACCACGTTCAGCCCACGGCA--ACGCAGCAT 41732
||||| || || ||||||| ||| || ||||| | | | ||| || || |||||
Sbjct 49292 CCGTCAAAGTTGAAGCACATCACCTTATGACCTTGCTTTG-CCAGTTCATGAC-CAGCAA 49349
Query 41733 AACCAGAACCATCAAATAGTGAGAAAAT 41760
||| ||||| || |||||||| ||||
Sbjct 49350 GACCGGAACCGTCGAATAGTGACCAAAT 49377
Score = 174 bits (192), Expect = 5e-39
Identities = 388/568 (68%), Gaps = 16/568 (3%)
Strand=Plus/Plus
Query 41204 TTTGTATCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCA 41263
||| | || ||||| ||||| ||| | ||||| ||||||||||| || | ||| |||
Sbjct 99151 TTTCTCTCGGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCA 99210
Query 41264 TCGCGAGCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGAC 41321
||||| | | ||| | || |||| | || || ||||| || || | | || |
Sbjct 99211 TCGCGCGGCGCAATATACATCGGGAACCAGGGG-TGCGCGTCATCCTCAGGAAGATAG-C 99268
Query 41322 CTCCAAACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACAC 41381
| || || | || |||| ||| || |||| | |||| |||||||| || |
Sbjct 99269 CGCCGTACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGC 99328
Query 41382 TAACAGGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCT 41441
| || ||||||||||| ||||| | || || | || |||| || ||||| |||
Sbjct 99329 TCACCGGATTCTCAATGATGTAAGTCACACCAAGCTCCTCACCAATGTTCGCAGCTATCC 99388
Query 41442 TTGCCGTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTGCAAAGT 41501
|| || |||| ||||| | |||||| ||||||||||||||||| |||||||
Sbjct 99389 GAGCGGTGGCAACAGCCTTCTCCTGGAATAACGGATCACGTTCACGCTTACTGGCAAAGT 99448
Query 41502 GACGCGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAG 41561
|||| | || |||||||| | ||||||||||||||||| || ||||||||||| ||
Sbjct 99449 GACGAGCACCACTAACAGCCAGGTCAGTGCATGGAGGGAAAGCCATAATAAAATCCGGCT 99508
Query 41562 TGCCAAAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAA 41620
||||| | || | | || |||| | | | ||| | | || | || | | |||| |
Sbjct 99509 TGCCATACACACCCGCGATCGCGTCACGTTCGAACTTCTCAT-CAATAAAGACGTTCACA 99567
Query 41621 TAAACTATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCA 41674
|| | ||||| ||||| ||| | || || ||| ||||| || ||||| ||
Sbjct 99568 TACTCAATGTTCGGATGCTCCACCCTGGCGTTGTACTTTGCATAATCTCCGTGATCGGCC 99627
Query 41675 CCGTCGAAATTAAAGCACAGCACTTTGTGACCACGTTCAGCCCACGGCA--ACGCAGCAT 41732
||||| || || ||||||| ||| || ||||| | | | ||| || || |||||
Sbjct 99628 CCGTCAAAGTTGAAGCACATCACCTTATGACCTTGCTTTG-CCAGTTCATGAC-CAGCAA 99685
Query 41733 AACCAGAACCATCAAATAGTGAGAAAAT 41760
||| ||||| || |||||||| ||||
Sbjct 99686 GACCGGAACCGTCGAATAGTGACCAAAT 99713
Score = 161 bits (178), Expect = 3e-35
Identities = 348/507 (69%), Gaps = 14/507 (3%)
Strand=Plus/Plus
Query 41210 TCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCATCGCGA 41269
|| ||||| |||||| ||| |||||||||||||||||| || | ||| ||||||||
Sbjct 199822 TCTGGCATGACAAAGTCGTCCGAAGTCCAAAGACAAGTTTTCTTCGGGTAAGCATCGCGC 199881
Query 41270 GCGGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCTCCAA 41327
| | ||| | || |||| | || ||| |||| || || | | || || |||
Sbjct 199882 GGCGCAATATACATCGGGAACCAGGGG-TGTGCGTCATTCTCAGGAAGATAG-CCGCCAT 199939
Query 41328 ACGCGCAAGGAT-GAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACACTAACA 41386
|| | || |||| ||||| | |||| | ||||| ||| ||||| || |||||
Sbjct 199940 ACTCCCAGGGATTGAAAG-TGTGGTCAGCCTTTCGCCAGGCTGATGACAGGACGCTAACC 199998
Query 41387 GGATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCC 41446
||||||||||| ||||| | || | | ||| | || || || |||||| ||
Sbjct 199999 GGATTCTCAATGATGTAAGTCACACCCAGGCTATCACCGATGTTCGCGGCAATCCGGGCG 200058
Query 41447 GTTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCT-GCAAAGTGACG 41505
|| |||| || || | |||||| |||||||||| |||| ||||| |||||||| ||
Sbjct 200059 GTGGCAACAGCTTTCTCCTGGAATAGCGGATCACGTTTACGC-TTGCTGGCAAAGTGTCG 200117
Query 41506 CGATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAGTGCC 41565
| || ||||| || | |||||||| || ||||| || ||||| ||||| || ||||
Sbjct 200118 AGCACCACTAACGGCCAGGTCAGTGCACGGCGGGAAGGCCATAATGAAATCCGGCTTGCC 200177
Query 41566 AAAGACGCGCATCATTGCGTTATGCTGGAATGATAATCCGATCCACTCATTCAAATAAAC 41625
| | || | | || || | | | | ||| | | | || || | |||| ||| |
Sbjct 200178 ATACACACCCGCGATCGCATCACGTTCGAACGTTTCATCAATGAACACGTTCACATACTC 200237
Query 41626 TATGTTGGGATG--AGTCACGCGCACTG---ATTG-GTAATCACCATGATCAGCACCGTC 41679
||||||||||| | || ||| || ||| ||||| || ||||| || |||||
Sbjct 200238 AATGTTGGGATGCTCTACCCGGGCATTGTACTTTGCATAATCTCCGTGATCGGCTCCGTC 200297
Query 41680 GAAATTAAAGCACAGCACTTTGTGACC 41706
|| || ||||||| |||||| |||||
Sbjct 200298 AAAGTTGAAGCACATCACTTTATGACC 200324
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785
Query 633 AGCAACCAATCAGAGGAATAAACGATG 659
||||||||||||||||||| | | |||
Sbjct 3786 AGCAACCAATCAGAGGAATCAGCTATG 3812
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963
Query 633 AGCAACCAATCAGAGGAATAAACGATG 659
||||||||||||||||||| | | |||
Sbjct 53964 AGCAACCAATCAGAGGAATCAGCTATG 53990
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415
Query 633 AGCAACCAATCAGAGGAATAAACGATG 659
||||||||||||||||||| | | |||
Sbjct 104416 AGCAACCAATCAGAGGAATCAGCTATG 104442
Score = 116 bits (128), Expect = 1e-21
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 573 ATAGCACGAATTGCTAAAACTTGCGCAAGGCCATTTGATATAGTGGCCTTATTCAAGAGA 632
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761
Query 633 AGCAACCAATCAGAGGAATAAACGATG 659
||||||||||||||||||| | | |||
Sbjct 154762 AGCAACCAATCAGAGGAATCAGCTATG 154788
Score = 95.1 bits (104), Expect = 4e-15
Identities = 73/84 (87%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 46025 GCAAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAA 46084
||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||
Sbjct 199703 GCAAATAGCACTTTTTGTTAAAACTCGATCGGTGCGATTTGGCATAATTACCTCATCGAA 199644
Query 46085 ACGA-AACGAGG-AAAACACAATG 46106
|||| | |||| |||||| ||||
Sbjct 199643 ACGAGATTGAGGAAAAACAAAATG 199620
Score = 89.7 bits (98), Expect = 2e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 38153 TGTTTTCCTTTTGTT-GCTACGTTTCGTTAAAACAAATATACCCGATACAAGATCGGGTG 38211
|| ||||||| | | ||| ||||||| | ||||||||||||||||||| ||||| ||||
Sbjct 94198 TGCTTTCCTTCGGGTCGCTTCGTTTCGATGAAACAAATATACCCGATACGAGATCTGGTG 94257
Query 38212 TTTTAACAAAAAGTGC 38227
||||||||||||||||
Sbjct 94258 TTTTAACAAAAAGTGC 94273
Score = 87.8 bits (96), Expect = 6e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 46027 AAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAAAC 46086
|||||||| |||||||||||||||||| || || |||| |||||||||| |||||||||
Sbjct 48700 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 48641
Query 46087 GA-AACGAGG-AAAACACAATG 46106
|| | |||| |||||| ||||
Sbjct 48640 GAGATTGAGGAAAAACAAAATG 48619
Score = 87.8 bits (96), Expect = 6e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 46027 AAATAGCACTTTTTGTTAAAACTCGATTGGGGTAGTTTGGCATAATTACCCCATCGAAAC 46086
|||||||| |||||||||||||||||| || || |||| |||||||||| |||||||||
Sbjct 99036 AAATAGCATTTTTTGTTAAAACTCGATCGGCGTGATTTGACATAATTACCTCATCGAAAC 98977
Query 46087 GA-AACGAGG-AAAACACAATG 46106
|| | |||| |||||| ||||
Sbjct 98976 GAGATTGAGGAAAAACAAAATG 98955
>seq2064
Length=2442
Score = 80.6 bits (88), Expect = 8e-11
Identities = 69/86 (80%), Gaps = 7/86 (8%)
Strand=Plus/Minus
Query 43967 CATCGTTAATCTCCTGATTGGT-------TTCGATGGGGTAACTATATCAAGTTACCCCG 44019
||| || |||| ||||||||| |||||||||||||||||| |||| |||||||
Sbjct 1509 CATGGTGAATCCTCTGATTGGTATCTCGTTTCGATGGGGTAACTATAGCAAGATACCCCG 1450
Query 44020 ATCCTTTTTTAGCAATTCGTGCTATT 44045
||| ||||| ||||||||||||||
Sbjct 1449 TCCCTGTTTTAACAATTCGTGCTATT 1424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157208726419836
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