Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 123 3e-23 seq202 87.8 2e-12 seq1330 86.0 9e-12 seq801 86.0 9e-12 >seq8 Length=1797525 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| |||||||||||||||||| ||| || Sbjct 10362 CCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 10303 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||||||| ||||||||| || | || || || ||| || || Sbjct 10302 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 10243 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || |||||| ||||| || || Sbjct 10242 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 10183 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||||| || ||| || ||||| Sbjct 10182 CCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| | || || ||| ||||||||| || ||||| ||| ||| || Sbjct 10866 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAATTTCTCACCCCAGCAATCTGACAAACC 10807 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || | ||||| || || | ||||||||| ||||| | | ||||| || ||| || Sbjct 10806 TGGAGACTCATTAGGACAAAACAATGACCAACTGCCATCATTTTGAACTCTTTCCATGAA 10747 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||| ||| ||||| |||| || |||||||| Sbjct 10746 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGGTGTTCTTC 10696 >seq202 Length=624202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/326 (66%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||||| || || ||||| ||||||||||| || | Sbjct 31417 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 31476 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||| || || ||||| || || || ||| ||||| || || | || ||||| | Sbjct 31477 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGC--TACGATTCGCTCCGCGA 31534 Query 48303 CTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCA 48360 | || | || ||||| | | ||||| | ||||||||| || ||||| | Sbjct 31535 AAGACTCGGAGCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGA 31594 Query 48361 TTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTA 48420 | || || || || | ||||| || || || | | || || | ||| || || | Sbjct 31595 TGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGA 31654 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | || || ||||| |||||||| || || ||||| || ||||| || ||||| || Sbjct 31655 GAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGG 31714 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCC 48506 | || || | || ||| |||||| Sbjct 31715 CGCGGGCCTCGGCGACCTGGACCTCC 31740 >seq1330 Length=73179 Score = 86.0 bits (94), Expect = 9e-12 Identities = 343/537 (64%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||||| || || ||||| ||||||||||| || | Sbjct 26720 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 26661 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 ||| || || ||||| || || || ||| ||||| || | || ||| || | Sbjct 26660 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 26601 Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || ||| | ||||| | | ||||| | ||||||||| || || || Sbjct 26600 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 26544 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| || || || | | || || | ||| || || Sbjct 26543 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 26484 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 | | || || ||||| |||||||| || || ||||| || ||||| || ||||| || Sbjct 26483 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 26424 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 | || || | || ||| |||||| | ||| | |||| | ||| ||| || Sbjct 26423 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 26364 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || ||||| ||||| || || || | | || | || | | ||| | Sbjct 26363 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 26304 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 | || | ||||| ||| || | ||| || || || || || ||||| || Sbjct 26303 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 26244 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 |||||||| || || || ||||| | |||||| || ||| ||||| || || ||| Sbjct 26243 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 26187 Score = 86.0 bits (94), Expect = 9e-12 Identities = 343/537 (64%), Gaps = 6/537 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||||| || || ||||| ||||||||||| || | Sbjct 46460 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 46519 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 ||| || || ||||| || || || ||| ||||| || | || ||| || | Sbjct 46520 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 46579 Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || ||| | ||||| | | ||||| | ||||||||| || || || Sbjct 46580 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 46636 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| || || || | | || || | ||| || || Sbjct 46637 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 46696 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 | | || || ||||| |||||||| || || ||||| || ||||| || ||||| || Sbjct 46697 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 46756 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 | || || | || ||| |||||| | ||| | |||| | ||| ||| || Sbjct 46757 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 46816 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || ||||| ||||| || || || | | || | || | | ||| | Sbjct 46817 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 46876 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 | || | ||||| ||| || | ||| || || || || || ||||| || Sbjct 46877 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 46936 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 |||||||| || || || ||||| | |||||| || ||| ||||| || || ||| Sbjct 46937 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 46993 >seq801 Length=188201 Score = 86.0 bits (94), Expect = 9e-12 Identities = 343/537 (64%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||||| || || ||||| ||||||||||| || | Sbjct 11721 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 11662 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 ||| || || ||||| || || || ||| ||||| || | || ||| || | Sbjct 11661 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 11602 Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || ||| | ||||| | | ||||| | ||||||||| || || || Sbjct 11601 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 11545 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| || || || | | || || | ||| || || Sbjct 11544 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 11485 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 | | || || ||||| |||||||| || || ||||| || ||||| || ||||| || Sbjct 11484 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 11425 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 | || || | || ||| |||||| | ||| | |||| | ||| ||| || Sbjct 11424 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 11365 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || ||||| ||||| || || || | | || | || | | ||| | Sbjct 11364 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 11305 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 | || | ||||| ||| || | ||| || || || || || ||||| || Sbjct 11304 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 11245 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 |||||||| || || || ||||| | |||||| || ||| ||||| || || ||| Sbjct 11244 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 11188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649852908480