Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq8 123 3e-23
seq202 87.8 2e-12
seq1330 86.0 9e-12
seq801 86.0 9e-12
>seq8
Length=1797525
Score = 123 bits (136), Expect = 3e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||| | ||| || | |||| |||||||||||||||||| ||| ||
Sbjct 10362 CCTCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCTCAACATTGGAACAATGCCA 10303
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|| || ||||||||||||||| ||||||||| || | || || || ||| || ||
Sbjct 10302 TTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGAG 10243
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || |||||||| || || || | ||| || |||||| ||||| || ||
Sbjct 10242 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAATG 10183
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
|| || || || ||||| ||||| || ||| || |||||
Sbjct 10182 CCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 10142
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
||||||||||||| | || || ||| ||||||||| || ||||| ||| ||| ||
Sbjct 10866 CTCTCTTTCATATCGGGTGTACAGCTGTTCAAATTTCTCACCCCAGCAATCTGACAAACC 10807
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016
|| | ||||| || || | ||||||||| ||||| | | ||||| || ||| ||
Sbjct 10806 TGGAGACTCATTAGGACAAAACAATGACCAACTGCCATCATTTTGAACTCTTTCCATGAA 10747
Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
||||||||| | ||| || ||| ||| ||||| |||| || ||||||||
Sbjct 10746 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGGGCTCGGTGTTCTTC 10696
>seq202
Length=624202
Score = 87.8 bits (96), Expect = 2e-12
Identities = 216/326 (66%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || ||||||| || || ||||| ||||||||||| || |
Sbjct 31417 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 31476
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
||| || || ||||| || || || ||| ||||| || || | || ||||| |
Sbjct 31477 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGC--TACGATTCGCTCCGCGA 31534
Query 48303 CTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCA 48360
| || | || ||||| | | ||||| | ||||||||| || ||||| |
Sbjct 31535 AAGACTCGGAGCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGA 31594
Query 48361 TTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTA 48420
| || || || || | ||||| || || || | | || || | ||| || || |
Sbjct 31595 TGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGA 31654
Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480
| || || ||||| |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 31655 GAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAGG 31714
Query 48481 ATCTCGCTTCTGTGATCTGTACCTCC 48506
| || || | || ||| ||||||
Sbjct 31715 CGCGGGCCTCGGCGACCTGGACCTCC 31740
>seq1330
Length=73179
Score = 86.0 bits (94), Expect = 9e-12
Identities = 343/537 (64%), Gaps = 6/537 (1%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || ||||||| || || ||||| ||||||||||| || |
Sbjct 26720 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 26661
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301
||| || || ||||| || || || ||| ||||| || | || ||| || |
Sbjct 26660 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 26601
Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
||| || ||| | ||||| | | ||||| | ||||||||| || || ||
Sbjct 26600 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 26544
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419
|| || || || || | ||||| || || || | | || || | ||| || ||
Sbjct 26543 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 26484
Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479
| | || || ||||| |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 26483 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 26424
Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539
| || || | || ||| |||||| | ||| | |||| | ||| ||| ||
Sbjct 26423 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 26364
Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599
|| ||||| ||||| || || || | | || | || | | ||| |
Sbjct 26363 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 26304
Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659
| || | ||||| ||| || | ||| || || || || || ||||| ||
Sbjct 26303 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 26244
Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716
|||||||| || || || ||||| | |||||| || ||| ||||| || || |||
Sbjct 26243 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 26187
Score = 86.0 bits (94), Expect = 9e-12
Identities = 343/537 (64%), Gaps = 6/537 (1%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || ||||||| || || ||||| ||||||||||| || |
Sbjct 46460 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 46519
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301
||| || || ||||| || || || ||| ||||| || | || ||| || |
Sbjct 46520 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 46579
Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
||| || ||| | ||||| | | ||||| | ||||||||| || || ||
Sbjct 46580 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 46636
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419
|| || || || || | ||||| || || || | | || || | ||| || ||
Sbjct 46637 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 46696
Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479
| | || || ||||| |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 46697 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 46756
Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539
| || || | || ||| |||||| | ||| | |||| | ||| ||| ||
Sbjct 46757 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 46816
Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599
|| ||||| ||||| || || || | | || | || | | ||| |
Sbjct 46817 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 46876
Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659
| || | ||||| ||| || | ||| || || || || || ||||| ||
Sbjct 46877 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 46936
Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716
|||||||| || || || ||||| | |||||| || ||| ||||| || || |||
Sbjct 46937 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 46993
>seq801
Length=188201
Score = 86.0 bits (94), Expect = 9e-12
Identities = 343/537 (64%), Gaps = 6/537 (1%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || || || || ||||||| || || ||||| ||||||||||| || |
Sbjct 11721 TCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAG 11662
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301
||| || || ||||| || || || ||| ||||| || | || ||| || |
Sbjct 11661 AAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAA 11602
Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
||| || ||| | ||||| | | ||||| | ||||||||| || || ||
Sbjct 11601 GACTCGGAGCCGTCG---ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGG 11545
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419
|| || || || || | ||||| || || || | | || || | ||| || ||
Sbjct 11544 ATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCG 11485
Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479
| | || || ||||| |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 11484 AGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAACCCGTAGAAG 11425
Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539
| || || | || ||| |||||| | ||| | |||| | ||| ||| ||
Sbjct 11424 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTTTCAAGGACG 11365
Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599
|| ||||| ||||| || || || | | || | || | | ||| |
Sbjct 11364 ATGCCATCGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCG 11305
Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659
| || | ||||| ||| || | ||| || || || || || ||||| ||
Sbjct 11304 GATAGGGCTTCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAG 11245
Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716
|||||||| || || || ||||| | |||||| || ||| ||||| || || |||
Sbjct 11244 GATGCCTCGGCCTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGAAACATA 11188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694649852908480
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