Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_031053.1 Length=50934 Score E Sequences producing significant alignments: (Bits) Value seq768 178 4e-40 >seq768 Length=200800 Score = 178 bits (196), Expect = 4e-40 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 11782 GTATTTAGCTTCGAAAGTCGTTCCGTCCGATACACTGAAGCCAACTTCCTCGCGGTACAG 11841 |||||| || || || || || || || | | ||| || || | || ||||| | | Sbjct 197113 GTATTTGGCCTCAAAGGTTGTGCCATCTGCGATACTAAAACCGATCTCTTCGCGAAATAA 197172 Query 11842 CGTCCAGCGGCATCCGTCACGGTCGAAGATGTATCCAGCAACCGCGCCGAGCGCGCGACC 11901 ||||| ||||||||||| || |||||||| ||||| || ||||||| |||||||| Sbjct 197173 TGTCCAACGGCATCCGTCCTCATCAAAGATGTAACCAGCTACGCCGCCGAGAGCGCGACC 197232 Query 11902 GCTTTCTACCTGGTAGCGCTTGCCGACGCTGAAGGATTTTTTCATCGGGTTGCTATGGTC 11961 ||||||||||||||| ||||| || || |||| ||||||||||||||||||| |||||| Sbjct 197233 GCTTTCTACCTGGTAACGCTTTCCAACTTTGAATGATTTTTTCATCGGGTTGCGATGGTC 197292 Query 11962 AAGGCCGACGCATTTTAGCGTTTTGGTTTTGAGTTCGATGAACGTCGC 12009 ||| ||| ||| |||||||| || ||||| | ||| |||| |||| Sbjct 197293 AAGTCCGGTGCACTTTAGCGTCTTTGTTTTCAACTCGGTGAATTTCGC 197340 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785 Query 22568 --GAACCAATCAG 22578 |||||||||| Sbjct 3786 AGCAACCAATCAG 3798 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963 Query 22568 --GAACCAATCAG 22578 |||||||||| Sbjct 53964 AGCAACCAATCAG 53976 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415 Query 22568 --GAACCAATCAG 22578 |||||||||| Sbjct 104416 AGCAACCAATCAG 104428 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761 Query 22568 --GAACCAATCAG 22578 |||||||||| Sbjct 154762 AGCAACCAATCAG 154774 Score = 86.0 bits (94), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 22505 GGCAAATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGA 22564 || ||||||||| |||| ||| | | ||| |||| ||||||||| |||||||||||| | Sbjct 197608 GGTAAATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCCTTATTCA 197549 Query 22565 AGCGAACCAATCAGGAGCTA 22584 || |||||||||||||||| Sbjct 197548 AGATAACCAATCAGGAGCTA 197529 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1414 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 1473 Query 17407 CGA 17409 || Sbjct 1474 AGA 1476 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 51592 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 51651 Query 17407 CGA 17409 || Sbjct 51652 AGA 51654 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 101980 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 102039 Query 17407 CGA 17409 || Sbjct 102040 AGA 102042 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406 ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 152390 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 152449 Query 17407 CGA 17409 || Sbjct 152450 AGA 152452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162862979907264