Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_031053.1
Length=50934
Score E
Sequences producing significant alignments: (Bits) Value
seq768 178 4e-40
>seq768
Length=200800
Score = 178 bits (196), Expect = 4e-40
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 11782 GTATTTAGCTTCGAAAGTCGTTCCGTCCGATACACTGAAGCCAACTTCCTCGCGGTACAG 11841
|||||| || || || || || || || | | ||| || || | || ||||| | |
Sbjct 197113 GTATTTGGCCTCAAAGGTTGTGCCATCTGCGATACTAAAACCGATCTCTTCGCGAAATAA 197172
Query 11842 CGTCCAGCGGCATCCGTCACGGTCGAAGATGTATCCAGCAACCGCGCCGAGCGCGCGACC 11901
||||| ||||||||||| || |||||||| ||||| || ||||||| ||||||||
Sbjct 197173 TGTCCAACGGCATCCGTCCTCATCAAAGATGTAACCAGCTACGCCGCCGAGAGCGCGACC 197232
Query 11902 GCTTTCTACCTGGTAGCGCTTGCCGACGCTGAAGGATTTTTTCATCGGGTTGCTATGGTC 11961
||||||||||||||| ||||| || || |||| ||||||||||||||||||| ||||||
Sbjct 197233 GCTTTCTACCTGGTAACGCTTTCCAACTTTGAATGATTTTTTCATCGGGTTGCGATGGTC 197292
Query 11962 AAGGCCGACGCATTTTAGCGTTTTGGTTTTGAGTTCGATGAACGTCGC 12009
||| ||| ||| |||||||| || ||||| | ||| |||| ||||
Sbjct 197293 AAGTCCGGTGCACTTTAGCGTCTTTGTTTTCAACTCGGTGAATTTCGC 197340
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3726 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 3785
Query 22568 --GAACCAATCAG 22578
||||||||||
Sbjct 3786 AGCAACCAATCAG 3798
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 53904 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 53963
Query 22568 --GAACCAATCAG 22578
||||||||||
Sbjct 53964 AGCAACCAATCAG 53976
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 104356 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 104415
Query 22568 --GAACCAATCAG 22578
||||||||||
Sbjct 104416 AGCAACCAATCAG 104428
Score = 91.5 bits (100), Expect = 5e-14
Identities = 64/73 (88%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 22510 ATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGC-- 22567
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 154702 ATAGCACGAATTGCTAAACCTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGAAGCAG 154761
Query 22568 --GAACCAATCAG 22578
||||||||||
Sbjct 154762 AGCAACCAATCAG 154774
Score = 86.0 bits (94), Expect = 2e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 22505 GGCAAATAGCACTTTTTGCTAAAACTTCCGCAAGGCCATTTGATATAGTGGCCTTATTGA 22564
|| ||||||||| |||| ||| | | ||| |||| ||||||||| |||||||||||| |
Sbjct 197608 GGTAAATAGCACGATTTGTTAATATTGCCGTAAGGTCATTTGATAAAGTGGCCTTATTCA 197549
Query 22565 AGCGAACCAATCAGGAGCTA 22584
|| ||||||||||||||||
Sbjct 197548 AGATAACCAATCAGGAGCTA 197529
Score = 82.4 bits (90), Expect = 2e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406
||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1414 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 1473
Query 17407 CGA 17409
||
Sbjct 1474 AGA 1476
Score = 82.4 bits (90), Expect = 2e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406
||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 51592 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 51651
Query 17407 CGA 17409
||
Sbjct 51652 AGA 51654
Score = 82.4 bits (90), Expect = 2e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406
||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 101980 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 102039
Query 17407 CGA 17409
||
Sbjct 102040 AGA 102042
Score = 82.4 bits (90), Expect = 2e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 17347 CAAATAGCACTTTTTGTTAAAACACGATCGGGGTGGCTTGCTATAGTTACCCCATCGAAA 17406
||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 152390 CAAATAGCACTAATTGTTAAAACCGGATCGGGGTATCTTGCTATAGTTACCCCATCGAAA 152449
Query 17407 CGA 17409
||
Sbjct 152450 AGA 152452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 162862979907264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |