Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12080 113 1e-19 seq4759 100 6e-16 seq10551 98.7 2e-15 seq8100 98.7 2e-15 seq7593 98.7 2e-15 seq7280 98.7 2e-15 seq6952 98.7 2e-15 seq6370 98.7 2e-15 seq5952 98.7 2e-15 seq5721 98.7 2e-15 seq5534 98.7 2e-15 seq4379 98.7 2e-15 seq4140 98.7 2e-15 seq2811 98.7 2e-15 seq2337 98.7 2e-15 seq2177 98.7 2e-15 seq556 98.7 2e-15 >seq12080 Length=19512 Score = 113 bits (124), Expect = 1e-19 Identities = 570/896 (64%), Gaps = 23/896 (3%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||| ||||| || || || || || ||||| |||||||||||||| | ||| Sbjct 7965 TCTGCATGTTTCCAATTCAGTACCCGGAGATATGGGAGATGTACAAGAAGGCCGAGGCCT 8024 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGT-CGTCGACTGGCGTGAGAAA 229869 | ||||||||| | ||||| || ||| || ||||| |||| ||||| || || Sbjct 8025 CGTTCTGGACCGCCGAGGAGGTCGATCTCTCCGGCGACGTACGTC-ACTGG---GAAAAC 8080 Query 229870 CTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGAT 229929 || | || ||||| | || ||||||| ||| | || | || ||||| | |||||| Sbjct 8081 CTAACCGATGACGAGAGGCACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGAC 8140 Query 229930 GGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCA 229989 || || || |||| |||||| | | || | ||| || |||| | ||||| Sbjct 8141 GGCATCGTTTTGGAGAATCTGGCGGGGAGGTTCATGAAGGAGGTCCAGGTTTCGGAGGCT 8200 Query 229990 CGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTG 230049 || || |||| | ||| | | ||| ||||| || ||| || ||| Sbjct 8201 CGCGCTTTCTATGGCTTCCAGATTGCGATCGAGAACATCCACTCCGAAATGTACAGTCTC 8260 Query 230050 CTTATCGACGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATTG 230107 | |||| | ||| || || | |||| |||| ||| || | || || | Sbjct 8261 TTGCTCGAGACCTATATCAAGGACTCGGCCGAGAA--GAACCGGCTGTTCCACGCGATGG 8318 Query 230108 AAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTA 230167 | | | | || || || ||||| ||||||| | | ||| | || || Sbjct 8319 AGACCGTTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAG 8378 Query 230168 AATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 ||||||| || ||| | ||| |||||| | || || ||||| ||| | || ||||| | Sbjct 8379 AATCGTTCGCGGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAA 8438 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAA----GGTGTGATGCCTGGCCTCGGTCTG 230283 | |||||||| || |||||||| || ||| || | ||||| || | | Sbjct 8439 GCTTCTGCGCGATATTTTGGCT----AAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTC 8494 Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTA 230342 || |||||||| ||| || ||||| |||||||| | | || ||| | || | || Sbjct 8495 TCCAACGAGTTGATCTCGCGAGACGAAGGTCTCCA-CTGCGATTTCGCGTGCCTGCTCTA 8553 Query 230343 TTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGT 230402 | | | || ||||| ||| || || ||| | || || || Sbjct 8554 CACTCTCTTGCGCAAGAAGCTGAGCGAGGAGCGCGTGAAGGCTATCGTCCGCGACGCGGT 8613 Query 230403 TGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACG 230461 || | || | |||||| | || ||||| | || || ||| || |||| ||||||| Sbjct 8614 GGATATAGAGAGGGAGTTTGTGTGCGACGCGCTGCCCTG-CGCGTTGGTTGGGATGAACG 8672 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 || || ||| | ||||||||||| || || || || | |||| | || | || | Sbjct 8673 GCGATCTGATGAGCCAGTACATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGTTGGGGT 8732 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| | ||| | | ||||||| |||| | ||||| || |||||| | |||| Sbjct 8733 GTGGCAAAATCTACGATGTTCAGAACCCATTTGATTGGATGGAACTGATTTCGTTGCAAG 8792 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 | |||||||| ||||| || ||| | || | || || |||| | || ||||||| Sbjct 8793 GAAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCAGAAGGCTTCTGTGATG 8848 >seq4759 Length=50079 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 2137 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2078 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2077 CCCCACGGTGGGC 2065 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1913 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1854 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1853 CCCACGGTGGGC 1842 >seq10551 Length=29912 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22095 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22036 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22035 CCCACGGTGGGC 22024 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 23562 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23503 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23502 CCCACGGTGGGC 23491 >seq8100 Length=16094 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10253 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10194 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10193 CCCACGGTGGGC 10182 >seq7593 Length=111839 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 56476 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56535 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56536 CCCACGGTGGGC 56547 >seq7280 Length=62766 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 195 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 254 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 255 CCCACGGTGGGC 266 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||| |||||||||| || || |||| || ||||||||||||||||||||| Sbjct 791 CGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 850 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 851 ACGGTGGGC 859 >seq6952 Length=11093 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4577 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4518 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4517 CCCACGGTGGGC 4506 >seq6370 Length=12238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1511 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1452 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1451 CCCACGGTGGGC 1440 >seq5952 Length=188164 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19890 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19831 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19830 CCCACGGTGGGC 19819 >seq5721 Length=102451 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 92370 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 92311 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 92310 CCCACGGTGGGC 92299 >seq5534 Length=39518 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7462 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7403 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7402 CCCACGGTGGGC 7391 >seq4379 Length=74698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 37759 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37818 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37819 CCCACGGTGGGC 37830 >seq4140 Length=201527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22925 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22984 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22985 CCCACGGTGGGC 22996 >seq2811 Length=131350 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 88545 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 88486 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 88485 CCCACGGTGGGC 88474 >seq2337 Length=652188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 557854 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 557913 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 557914 CCCACGGTGGGC 557925 >seq2177 Length=193264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18785 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18844 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18845 CCCACGGTGGGC 18856 >seq556 Length=107742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 48413 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48472 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48473 CCCACGGTGGGC 48484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057279750874280