Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12080 114 1e-20 >seq12080 Length=19512 Score = 114 bits (126), Expect = 1e-20 Identities = 383/584 (66%), Gaps = 13/584 (2%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || ||||||||||| || | || ||||||| ||| | ||||| || || || Sbjct 8548 CAGGCACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGT 8489 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 ||||||||||| || || || |||| ||||||||||||| ||| || || || Sbjct 8488 TAACCCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 8429 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || |||||| | || || ||||| | | || ||| ||| | | || Sbjct 8428 GAAAATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGT- 8370 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 || ||||| | | |||||||||| || | | | |||| | || || || || Sbjct 8369 -CG-ATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGC 8312 Query 17200 CTTAAATAATTTCTCTTTTTC-CTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTG 17257 | || | | || ||| | | | ||| | ||||| || |||| | || ||| Sbjct 8311 GTGGAACA--GCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTG 8254 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 |||||||||||||| |||||||| || || ||||| || || || ||||| || || || Sbjct 8253 TACATTTCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTC 8195 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 || | || || ||| ||| | |||| ||||| || |||||||||||| Sbjct 8194 CGAAACCTGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGA 8135 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACG 17434 |||||||| || || | | || | ||||| | | ||||| |||| || | Sbjct 8134 GGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGT-TAGGTTTT 8076 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 | ||||| || || ||| | ||| || || |||| |||||| || ||| | Sbjct 8075 C-CCAGTGACGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 8017 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| || ||||| | ||| || || ||| || || || || Sbjct 8016 GCCTTCTTGTACATCTCCCATATCTCCGGGTACTGAATTGGAAA 7973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517285817986080