Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12080 156 5e-33 seq13333 93.3 5e-14 >seq12080 Length=19512 Score = 156 bits (172), Expect = 5e-33 Identities = 384/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| ||||| ||||||| || || |||||||| || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||||| || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 8426 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG--GCGCTGTCATGT 24311 ||| ||||| || || ||||| || || | ||||| | || | | | | | Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGCGATGAGCC--TCTCCGCGAACGATTCTCCGCCGTCG 8368 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | ||||| ||||||||||| || ||||| | ||||| || || | Sbjct 8367 ATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGG 8308 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || || ||| || || || || | ||| || || | ||| ||||| |||||| Sbjct 8307 AACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATT 8248 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || ||||| || || || || || || || |||||| | |||||| | || | Sbjct 8247 TCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACC 8188 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || | | || | ||| || || || ||||| ||| || Sbjct 8187 TGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCG 8128 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 24611 || || || | || || | || || | | ||||| ||||| || | ||| | | Sbjct 8127 AAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGA 8068 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 | || || | ||| || || || | ||||| || || ||||| ||||| || Sbjct 8067 CGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 8008 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||||| | ||| || || | || ||||||||||| || Sbjct 8007 TACATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 >seq13333 Length=25420 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| ||| | || |||||| ||||| | ||| |||||| || |||| || Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 54041 ||| | |||| ||||| | ||| ||||| ||||| | | ||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATC 54075 |||||||||||| ||||||||| ||| ||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATC 24710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593423581442880