Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq762 105 6e-18 seq2332 93.3 4e-14 seq2326 93.3 4e-14 seq5335 82.4 7e-11 >seq762 Length=331234 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 300922 AATGCAAATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 300981 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| ||| || || || |||||| | || ||| || Sbjct 300982 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 301041 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||| ||||| ||||| || || |||||| | ||| | || |||||||| Sbjct 301042 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 301101 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| |||||||| ||||| ||||| ||||| Sbjct 301102 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 301132 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 317364 AATGCAGATATTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 317423 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || || || || |||||| | || ||| || Sbjct 317424 AGACACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAAGGTATCCCACCAGACCA 317483 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || ||||| |||||| | ||| | || |||||||| Sbjct 317484 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 317543 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| |||||||| ||||| ||||| ||||| Sbjct 317544 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 317574 >seq2332 Length=86198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| ||||||| |||||||||||| | || ||| ||||| || || || | Sbjct 74532 ATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCAACAGAGGCTGATAT 74591 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 | || || ||||| || |||||| || ||| |||| || || || |||||||| || | Sbjct 74592 TCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAACATTCAGAAAGAGT 74651 Query 29155 CTACTCTTCACATGGT 29170 |||||||||| |||| Sbjct 74652 CTACTCTTCATTTGGT 74667 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| || || || || || || || || Sbjct 74087 AAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTGATTTTCGCTGGAAAG 74146 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||| | |||| ||||||||||||| ||||||||||||||||| || ||| Sbjct 74147 CAGCTTGAGGATGGCCGAACTTTGGCCGATTACAACATTCAGAAGGAATCTACACTCCAC 74206 >seq2326 Length=95029 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| ||||||| |||||||||||| | || ||| ||||| || || || | Sbjct 85087 ATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCAACAGAGGCTGATAT 85146 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 | || || ||||| || |||||| || ||| |||| || || || |||||||| || | Sbjct 85147 TCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAACATTCAGAAAGAGT 85206 Query 29155 CTACTCTTCACATGGT 29170 |||||||||| |||| Sbjct 85207 CTACTCTTCATTTGGT 85222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| || || || || || || || || Sbjct 84642 AAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTGATTTTCGCTGGAAAG 84701 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||| | |||| ||||||||||||| ||||||||||||||||| || ||| Sbjct 84702 CAGCTTGAGGATGGCCGAACTTTGGCCGATTACAACATTCAGAAGGAATCTACACTCCAC 84761 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || ||||| ||||| | || |||||| || || || |||||||| Sbjct 85321 AAGCAAAGA-TTCAAGATAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTCATCTTTGCT 85379 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||||| || ||| ||| |||| ||||||||||||||||||||||| || Sbjct 85380 GGAAAACAACTTGAGGATGGTCGCACTCTGGCTGATTACAATATTCAGAAGGAATCAACA 85439 Query 29160 CTTCA 29164 || || Sbjct 85440 CTCCA 85444 >seq5335 Length=19063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || || || ||||| | || |||||| || || ||||||||||| Sbjct 7663 AAGCAAAGA-TTCAAGACAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTTATCTTTGCA 7605 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || || ||||| || ||| | ||| | || ||||||||||||||||||||||| ||| Sbjct 7604 GGGAAGCAACTCGAGGATGGCCGCACTCTTGCTGATTACAATATTCAGAAGGAATCAACT 7545 Query 29160 CTTCA 29164 || || Sbjct 7544 CTCCA 7540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || ||||| |||||| | || || ||||| || ||||| || || Sbjct 7891 AAGCAAAAA-TTCAGGATAAGGAAGGTATTCCACCGGACCAACAGAGGCTTATATTCGCT 7833 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || ||||| ||||| || || ||| |||| || || ||||| ||||| || |||||| Sbjct 7832 GGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATAATATCCAGAAAGAGTCTACT 7773 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||| || | | || |||||| Sbjct 7772 CTTCATTTGGTTCTAAGGCTTCGTGGAGGG 7743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| || || | || ||||| || || Sbjct 8342 AAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAGCAGAGGTTGATTTTTGCTGGAAAG 8283 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | |||| |||||||||| || ||||||||||| ||||| || ||| Sbjct 8282 CAACTCGAGGATGGCCGAACTTTGGCCGATTATAACATTCAGAAGGAGTCTACACTCCAC 8223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428126371826180