Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq762 102 7e-17 seq4898 89.7 4e-13 seq6121 84.2 2e-11 >seq762 Length=331234 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| ||||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 317364 AATGCAGATATTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 317423 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || ||||| || || || || |||||| | || ||| || Sbjct 317424 AGACACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAAGGTATCCCACCAGACCA 317483 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||||||||| || || ||| | |||||| | ||| | || |||||||| Sbjct 317484 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 317543 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || ||||| ||||| ||||| ||||| Sbjct 317544 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 317574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| || |||||||| ||| || ||| | | Sbjct 300922 AATGCAAATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 300981 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || | ||| ||| || || || |||||| | || ||| || Sbjct 300982 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 301041 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||| ||||| ||||| || | |||||| | ||| | || |||||||| Sbjct 301042 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 301101 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || ||||| ||||| ||||| ||||| Sbjct 301102 TATCCAGAAGGAGTCTACCCTTCATCTGGTG 301132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | || || ||||| || || || ||||| ||||| || |||||| Sbjct 300788 GACAAAGAGGGTATCCCACCGGACCAACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAA 300847 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | || | || |||||||| ||||||||||| || || || ||| ||||| | Sbjct 300848 GATGGAAGGACCTTAGCTGATTACAACATTCAAAAGGAGTCAACCCTGCACTTGGTGCTG 300907 Query 25248 CGATTACGAGGAGG 25261 ||||| || ||||| Sbjct 300908 CGATTGCGTGGAGG 300921 >seq4898 Length=109433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||| ||||| || || || ||||| || || ||||||||| Sbjct 54356 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 54415 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| |||| | || |||||||| || |||||||| || || |||||| |||| || Sbjct 54416 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 54475 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 54476 AGACTTCGGGGAGG 54489 >seq6121 Length=68638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| || ||||| || || || ||||| || || ||||||||| Sbjct 2959 GACAAGGAAGGTATCCCCCCGGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 3018 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| |||| | || |||||||| || |||||||| || || |||||| |||| || Sbjct 3019 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 3078 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 3079 AGACTTCGGGGAGG 3092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410595755532584