Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5462 95.1 2e-14 seq3733 91.5 2e-13 seq5335 86.0 9e-12 seq2332 86.0 9e-12 seq2326 84.2 3e-11 >seq5462 Length=105758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | || | ||| | |||||| ||||| || |||||||| | | Sbjct 92387 CCACCGCGAAGACGAAGAACAAGATGAAGAGTAGACTCTTTCTGAATGTTATAATCAGCA 92328 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||| || |||||||| |||| || |||||||||||||| Sbjct 92327 AGAGTGCGTCCATCCTCCAATTGCTTACCAGCAAAGATCAGCCTCTGCTGATCCGGAGGG 92268 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 92267 ATTCCCTCCTTATCTTG 92251 >seq3733 Length=159728 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || |||||||| | |||||| || | ||| || ||||| || |||||||| | Sbjct 62561 CTTTTGA-ATGTTATAATCAGCAAGAGTCCTCCCATCCTCCAATTGCTTACCAGCAAAGA 62619 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| || |||||||||||||| ||||| || |||||||| Sbjct 62620 TCAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCTTG 62659 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | || | ||| | ||| ||||| ||| || || |||||||| | Sbjct 111395 CCACCGCGAAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGA-ATGTTATAATCAGC 111453 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| || | ||| || ||||| || |||||||| |||| || |||||||||||||| Sbjct 111454 GAGAGTCCTCCCATCCTCCAATTGCTTACCAGCAAAGATCAGCCTCTGCTGATCCGGAGG 111513 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||| || ||||| || Sbjct 111514 GATTCCCTCCTTATCCTG 111531 >seq5335 Length=19063 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | | ||||| || ||| || | ||| ||||||||||||||||| || Sbjct 8245 ATGTTATAATCGGCCAAAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTC 8304 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||| |||||||| || || Sbjct 8305 TGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 8336 >seq2332 Length=86198 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||||| | | ||| || | ||||||||||||||| || | || Sbjct 74868 ATATTGTAATCAGCCAGAGTGCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGCCTC 74809 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| ||||| |||||||| Sbjct 74808 TGCTGATCCGGAGGAATCCCTTCCTTATCTTG 74777 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| || | |||||||| | |||||| ||||| || ||||| || | Sbjct 74687 TTCCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG 74628 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | ||||||||||| || |||| || || || || || | Sbjct 74627 CCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTG 74568 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || Sbjct 74567 GAATACCTTCTTTATCCTG 74549 >seq2326 Length=95029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| || | |||||||| | |||||| ||||| || ||||| || | Sbjct 85242 TTCCTCCGCGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG 85183 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | ||||||||||| || |||| || || || || || | Sbjct 85182 CCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTG 85123 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || Sbjct 85122 GAATACCTTCTTTATCCTG 85104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743153186923520