Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12080 98.7 9e-16 >seq12080 Length=19512 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || || || || || || | ||||||||| ||||||||||| || |||| Sbjct 8852 TTGACATCACAGAAGCCTTCTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTTC 8793 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATC 16044 ||| || ||||| |||||| ||||||| || || |||||| ||| ||| | Sbjct 8792 CTTGCAACGAAATCAGTTCCATCCAATCAAATGG--GTTCTGAACATCGTAGATTTTGCC 8735 Query 16045 GCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 || ||||| | ||| | |||||||||||||| || || ||||| |||| | ||| Sbjct 8734 ACACCCCAACGCGCCCAAAAGCCTATCCGCCACAAACTCGATGTACTGGCTCATCAGATC 8675 Query 16105 ACAGTTCATTCC 16116 | |||||| || Sbjct 8674 GCCGTTCATCCC 8663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279842101600