Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3147 96.9 3e-15 seq1387 91.5 1e-13 >seq3147 Length=139015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| ||| || || |||||||||||||| || || ||||| ||| Sbjct 112195 CAGTTTTATGTGGCCAATGGTGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 112254 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| || ||||| || ||| |||||| || || || | |||||||| ||| Sbjct 112255 GGCCTCGGTGTGCCATTCAACATCGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 112314 Query 20551 GTT 20553 ||| Sbjct 112315 GTT 112317 >seq1387 Length=28451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| || |||| |||||||||||||| || || |||||||| Sbjct 7458 CAGTTTTATGTAGCCAATGGGGAGCTGTCCTGTCAAATGTATCAGCGGTCTGCTGATATA 7399 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || |||||||| || ||| ||||| ||||||| | | || || |||||||| || Sbjct 7398 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCGTTATTGACATACATGATTGCTCAA 7339 Query 20551 GTT 20553 ||| Sbjct 7338 GTT 7336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398988638851420