Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq762 105 5e-18 seq6121 100 2e-16 seq4898 100 2e-16 seq3733 87.8 1e-12 seq2332 87.8 1e-12 seq5462 86.0 5e-12 seq2326 84.2 2e-11 seq5335 82.4 6e-11 >seq762 Length=331234 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || | || || |||| ||| || ||||| || |||||||||||||| || || Sbjct 300922 TCCTCCACGCAATCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATGTTGTAATCAGC 300863 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||| || ||||| ||| | || || || ||||| ||| || Sbjct 300862 TAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG 300803 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || || | | || ||||| | ||| ||| ||| | ||| Sbjct 300802 GATACCCTCTTTGTCTTGGATCT-TAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 300744 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| ||||||||||||| || || ||||||||||||||| Sbjct 300743 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATT 300694 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || ||||| ||||| |||||||||||||| Sbjct 316908 TCCACCTCGAAGCCGGAGCACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCGGC 316849 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | |||||| || ||| |||| | || || || || || Sbjct 316848 AAGTGTGCGACCATCTTCGAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 316789 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || ||||| || ||||| | |||| ||| | ||| |||||| | ||| Sbjct 316788 GATACCCTCCTTGTCTTGAATTT-TGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAA 316730 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || ||||||| ||||| || || ||||||||||||||| Sbjct 316729 CTTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTCACAAAAATTTGCATT 316680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||| || ||||||||||| | || || |||| Sbjct 317120 AGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGGCTAGGGTCCGACCATCT 317061 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||| | || || || || || | ||| ||||| || Sbjct 317060 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 317001 Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | |||| ||| | | | |||||| | ||| ||| | || ||| | Sbjct 317000 TGAATTT-TGGCTTTGACATTATCGATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGT 316942 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| |||||||| || || ||||||||||||||| Sbjct 316941 TTTACCGGTCAAGGTCTTCACAAAAATTTGCATT 316908 >seq6121 Length=68638 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| ||||| | |||| ||||||||| || || ||||| |||||||| || || Sbjct 3093 TCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCAGC 3034 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||| || || ||| | || || || ||||| ||| ||| Sbjct 3033 AAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCCGGGGG 2974 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 2973 GATACCTTCCTTGTC 2959 >seq4898 Length=109433 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| ||||| | |||| |||||||||||| || ||||| |||||||| || || Sbjct 54490 TCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCAGC 54431 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||| || || ||| | || || || ||||| || ||| Sbjct 54430 AAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGG 54371 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 54370 GATACCTTCCTTGTC 54356 >seq3733 Length=159728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | || | ||| || ||||| ||||| || |||||||||||||| Sbjct 62979 CCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAGTCGGCG 63038 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || || ||||||||||| || || |||| || || || || ||| ||| Sbjct 63039 AGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 63098 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | | | ||||| | ||| Sbjct 63099 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACC 63158 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||||||| |||| ||||| | ||||| || || || ||||| ||| Sbjct 63159 TCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 63209 >seq2332 Length=86198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||||||||| || ||||| ||||| || |||| || || ||| || | |||| Sbjct 74889 TGGAGTGTTGATTCCTTCTGAATATTGTAATCAGCCAGAGTGCGACCATCCTCAAGTTGT 74830 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || |||||| || | ||||||||||| ||| | | Sbjct 74829 TTTCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGAATCT-T 74771 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | | || ||| | ||| |||| ||||||| | || || || Sbjct 74770 TGCTTTAACATTATCTATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCAGT 74711 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || || || |||||||| |||||| Sbjct 74710 CAGAGTCTTAACAAAAATCTGCATT 74686 >seq5462 Length=105758 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || || | || || ||||| ||||| ||||||||||| ||||| Sbjct 7004 CCTCCACGGAGCCTGAGCACGAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCGGCG 6945 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || || ||||||||||| || || |||| || || || || ||| || Sbjct 6944 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGA 6885 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| ||| | ||| || | ||| ||||| | ||| Sbjct 6884 ATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCGGAGCTCTCTACC 6825 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || ||||| | ||||| ||||| || ||||| Sbjct 6824 TCCAAGGTGATCGTCTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 6778 >seq2326 Length=95029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||||||||| || ||||| ||||| || |||| || || ||| || | |||| Sbjct 85444 TGGAGTGTTGATTCCTTCTGAATATTGTAATCAGCCAGAGTGCGACCATCCTCAAGTTGT 85385 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || ||||| || | ||||||||||| ||| | | Sbjct 85384 TTTCCAGCAAAGATGAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTATCTTGAATCT-T 85326 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | | || ||| | ||| |||| ||||||| | || || || Sbjct 85325 TGCTTTAACATTATCTATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCAGT 85266 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || || || |||||||| |||||| Sbjct 85265 CAGAGTCTTAACAAAAATCTGCATT 85241 >seq5335 Length=19063 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || |||| ||||| || || ||||| || || || ||||| ||| Sbjct 7744 CCTCCACGAAGCCTTAGAACCAAATGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCC 7803 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || |||| ||||| || || | ||||| || ||||| ||| || Sbjct 7804 AAAGTCCTGCCCTCCTCCAGCTGTTTTCCAGCGAATATAAGCCTCTGTTGGTCCGGTGGA 7863 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||| ||||| | ||| || ||| | ||| Sbjct 7864 ATACCTTCCTTATCCTGAATTT-TTGCTTTGACGTTGTCAATTGTATCAGAGCTCTCAAC 7922 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || | ||||| || | || |||||||| ||||||||| Sbjct 7923 CTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCATT 7971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379158348572220