Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12080 145 1e-29 seq13333 84.2 3e-11 >seq12080 Length=19512 Score = 145 bits (160), Expect = 1e-29 Identities = 255/369 (69%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| ||||| ||||||| || || ||||| || || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||||| || |||||||| ||||||||||| | ||| |||||| ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAA 8425 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33757 || ||||| || ||| ||||| || || ||||| | ||| | ||| ||| Sbjct 8424 ATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTC-CGCGAACGATTCTCCGCCGTC--- 8369 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||| | ||||| ||||||||||| || ||||| | || || || || | Sbjct 8368 GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTG 8309 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || ||| || || || || | ||| || |||| ||| ||||| ||||| Sbjct 8308 GAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACAT 8249 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| || || ||||| || || || ||||| || || |||||| | |||||| | || Sbjct 8248 TTCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAAC 8189 Query 33938 CTGCACTTC 33946 ||| || || Sbjct 8188 CTGGACCTC 8180 >seq13333 Length=25420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 |||||||| ||| | || |||||| || || | ||| |||||| || |||| | Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 63279 ||| | |||| ||||| | ||| ||||| ||||| | | ||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 |||||||||||| ||||||||| ||| ||||| | || | || ||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACGTGCACGATTCTCCTC 24728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629501463055680