Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12080 152 7e-32 seq13333 87.8 2e-12 >seq12080 Length=19512 Score = 152 bits (168), Expect = 7e-32 Identities = 381/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| ||||| ||||||| || || |||||||| || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||||| || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 8426 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||| ||||| || || ||||| || || ||||| | | | | | | | || Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTCGAT 8366 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| | ||||| ||||||||||| || ||||| | ||||| || || | || Sbjct 8365 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 8306 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || ||| || || || || | ||| || || | ||| ||||| |||||||| Sbjct 8305 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 8246 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || ||||| || || || || || || || |||||| | |||||| | || ||| Sbjct 8245 GGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTG 8186 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || || | || | | || | ||| || || || ||||| ||| || || Sbjct 8185 GACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 8126 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || || | || || | || || | | |||| ||||| || | ||| | | Sbjct 8125 GAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACG 8066 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | || || | ||| || || || | ||||| || || ||||| ||||| || || Sbjct 8065 TACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 8006 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||| | ||| || || | || ||||||||||| || Sbjct 8005 CATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 >seq13333 Length=25420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/148 (74%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 |||||||| ||| | || |||||| || || | ||| |||||| || |||| || Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 66072 ||| | |||| ||||| | ||| ||||| ||||| | | ||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAA 66100 |||||||||||| ||||||||| ||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGC-ATAAA 24703 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 25019 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 25078 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| || || | ||||||||||| | ||| Sbjct 25079 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAGCTGAG 25138 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 25139 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 25198 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 25199 CCTTCAATACTATCATCTTTCATG 25222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657842430163040