Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5462 114 1e-20 seq3733 109 5e-19 seq2332 98.7 1e-15 seq2326 98.7 1e-15 seq5335 86.0 6e-12 seq762 84.2 2e-11 >seq5462 Length=105758 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| ||| | ||||| || |||||||| ||||| || || ||| Sbjct 6549 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 6490 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| | ||| || || || |||||| || |||||||||||||| Sbjct 6489 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGAGG 6430 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 6429 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 6370 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| ||||| ||||| || ||||| Sbjct 6369 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 6322 Score = 105 bits (116), Expect = 7e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | |||| ||||||||||| |||||||||||||| Sbjct 92390 TGGCCACCGCGAAGACGAAGAACAAGATGAAGAGTAGACTCTTTCTGAATGTTATAATCA 92331 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | |||| || | || || | || ||||||||| ||||||| | |||||||| || Sbjct 92330 GCAAGAGTGCGTCCA-TCCTCCAATTGCTTACCAGCAAAGATCAGCCTCTGCTGATCCGG 92272 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| || || || || || ||| | || | || | | || | || |||| | || Sbjct 92271 AGGGATTCCCTCCTTATC-TTGAATCTTCGCCTTCACATTGTCAATCGTATCGGAGCTCT 92213 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 92212 CCACCTCCAGAGTAATCGTCTTCCCAGTCAGAGTCTTGACGAATATCTGCATACCT 92157 Score = 100 bits (110), Expect = 3e-16 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC- 139593 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 7235 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCA 7176 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 ||| | || | | || || | || || |||||| ||||||| | |||||||| || Sbjct 7175 GCT-AGAGTACGCCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGG 7117 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| || || || || || ||| | || | || | | || | || |||| | || Sbjct 7116 AGGGATTCCCTCCTTATC-TTGAATCTTGGCCTTCACATTATCGATCGTATCGGAGCTCT 7058 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 7057 CCACCTCCAGAGTAATCGTCTTCCCCGTCAGAGTCTTCACGAATATCTGCATACCT 7002 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || | ||| | |||||||||||| || || || |||||| | ||| | || Sbjct 6762 CAACACAAGGTGGAGCGTAGACTCTTTCTGGATATTGTAATCGGCAAGTGTACGGCCTTC 6703 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | || || || || |||| || | ||||| || || || || ||||| ||||| Sbjct 6702 CTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 6643 Query 139672 GGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | || | | || | ||||||| | ||||||||| | || | || Sbjct 6642 C-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAACGTGATCG 6584 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||||| ||||| ||||| || ||||| Sbjct 6583 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 6550 >seq3733 Length=159728 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| ||| | ||||| || |||||||| ||||| || || ||| Sbjct 153574 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 153633 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| | ||| || || || |||||| || ||||||||||| || Sbjct 153634 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 153693 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 153694 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 153753 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| ||||| ||||| || ||||| Sbjct 153754 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 153801 Score = 105 bits (116), Expect = 7e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||||||||| Sbjct 62520 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCA 62579 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || | || ||||||||| ||||||| | |||||||| ||| Sbjct 62580 GCAAGAGTCCTCCCATCCTCCAATTGCTTACCAGCAAAGATCAGCCTCTGCTGATCCGGA 62639 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | || | || | | || | || |||| | ||| Sbjct 62640 GGGATTCCCTCCTTATC-TTGAATCTTCGCCTTCACATTGTCAATCGTATCGGAGCTCTC 62698 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 62699 CACCTCTAGAGTAATCGTCTTCCCAGTCAGAGTCTTGACGAATATCTGCATACCT 62753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||||| || ||||| ||||||||||| ||||| Sbjct 152888 TGGCCACCGCGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCA 152947 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | | || || | || || |||||| |||| || | |||||||| ||| Sbjct 152948 GCGAGAGTACGCCCTTCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGA 153007 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | |||| || | | || | || |||| | ||| Sbjct 153008 GGAATTCCCTCCTTATC-TTGAATCTTTGCCTTCACATTATCGATCGTATCGGAGCTCTC 153066 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 153067 CACCTCCAAAGTAATCGTCTTCCCCGTCAGAGTCTTCACGAATATCTGCATACCT 153121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | |||| || || || ||||||||||||||||| Sbjct 111392 TGGCCACCGCGAAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGAATGTTATAATCA 111451 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || | || ||||||||| ||||||| | |||||||| ||| Sbjct 111452 GCGAGAGTCCTCCCATCCTCCAATTGCTTACCAGCAAAGATCAGCCTCTGCTGATCCGGA 111511 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || || || ||| | || | || | | || | || || | ||| Sbjct 111512 GGGATTCCCTCCTTATC-CTGAATCTTCGCCTTCACATTATCGATCGTATCAGAACTCTC 111570 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| | || | |||||| || |||| || || |||||||| |||||| || Sbjct 111571 CACCTCCAGAGTAATCGTCTTCCCAGTCAGAGTCTTGACGAATATCTGCATACCT 111625 >seq2332 Length=86198 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| ||||||||||| ||||||||||| || || || || ||||| Sbjct 74668 AACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCTTC 74609 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| ||||| | ||||| | || || || || || || |||||||| || | Sbjct 74608 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATC-CT 74550 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| ||| | | || | || || | | ||| ||||||| || | |||| Sbjct 74549 GAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCGACCTCAAGAGTAATAGTCT 74490 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || |||||||| Sbjct 74489 TGCCAGTAAGAGTCTTTACAAAGATTTGCAT 74459 >seq2326 Length=95029 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| ||||||||||| ||||||||||| || || || || ||||| Sbjct 85223 AACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCTTC 85164 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| ||||| | ||||| | || || || || || || |||||||| || | Sbjct 85163 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATC-CT 85105 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| ||| | | || | || || | | ||| ||||||| || | |||| Sbjct 85104 GAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGAGTAATAGTCT 85045 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || |||||||| Sbjct 85044 TGCCAGTAAGAGTCTTTACAAAGATTTGCAT 85014 >seq5335 Length=19063 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| ||||||||||| ||||| || |||| ||||| ||||| || |||||| | Sbjct 7323 CTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 7382 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 ||| || | |||||||| || || || || || ||||| ||| | || | ||| | | Sbjct 7383 GATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTC-CTGAATCTTAGCTTTCACGT 7441 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | || |||| | ||||||||||| || | ||||| || |||| ||||| | Sbjct 7442 TATCGATGGTATCGGAGCTCTCCACCTCAAGAGTGATTGTCTTCCCAGTCAGAGTTTTCA 7501 Query 139752 CGAATATTTGCATA 139765 | || || |||||| Sbjct 7502 CAAAAATCTGCATA 7515 >seq762 Length=331234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || || |||| || ||||| | || ||||| ||||||||||| ||||| ||| Sbjct 300921 CCTCCACGCAATCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATGTTGTAATCAGCT 300862 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| | ||| || |||||| | ||||| | || || || || || Sbjct 300861 AAG-GTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG 300803 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| || ||| | | || | || || | | ||| || Sbjct 300802 GATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAAC 300743 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || ||||||||||| || || || || |||||||| Sbjct 300742 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCAT 300695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495815000675200