Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12080 134 2e-26 seq13333 98.7 1e-15 >seq12080 Length=19512 Score = 134 bits (148), Expect = 2e-26 Identities = 377/576 (65%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| ||||| ||||||| || | |||||||| || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||||| || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 8426 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || ||||| || || ||||| | || ||||| | | | | | | | || Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTCGAT 8366 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| | ||||| ||||||||||| || ||||| | || || || || | || Sbjct 8365 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 8306 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || ||| || || || || | ||| || |||| ||| ||||| |||||||| Sbjct 8305 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 8246 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| || || || ||||| || || |||||| | |||||| | || ||| Sbjct 8245 GGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTG 8186 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | || | | || | ||| || || || ||||| ||| || || Sbjct 8185 GACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 8126 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || || | || || | || || || | |||| ||||| || | ||| | | Sbjct 8125 GAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACG 8066 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | || || | ||| || || || | ||||| || || ||||| ||||| || || Sbjct 8065 TACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 8006 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||| | ||| || || | || || ||||| || || Sbjct 8005 CATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 >seq13333 Length=25420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 |||||||| ||||| || || ||| || || | ||| |||||| ||| | || || Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 ||| | || | |||||| | ||| ||||| ||||||| | |||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||||||| ||||||||| ||| ||||| | | | || |||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACGTGCACGATTCTCCTC 24728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717908264975840