Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3733 102 6e-17 seq762 100 2e-16 seq5462 96.9 3e-15 >seq3733 Length=159728 Score = 102 bits (112), Expect = 6e-17 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || |||| | || | || | |||| ||| || || | |||||| |||| Sbjct 153574 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 153633 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| ||||| || || ||||| || ||||||||||| ||||||| ||| Sbjct 153634 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 153693 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | || || || | | |||||| ||| ||| | Sbjct 153694 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCG-GAGCTCTCCA 153752 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCT 43114 | || | || || || || ||||| ||||||||||| || || ||||| ||||| Sbjct 153753 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCATCTTTCT 153807 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || || ||||| | |||| || ||| || || | ||||| |||| Sbjct 62978 GCCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAGTCGGC 63037 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| ||||||||||| ||||| || || | | ||| || || | || Sbjct 63038 GAGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGG 63097 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || | | |||||| ||| ||| | Sbjct 63098 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCG-GAGCTCTCCA 63156 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || |||||||||||||| |||||||| || || ||||| || Sbjct 63157 CCTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 63208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || || ||||| | |||| || ||| || || | |||||||||| Sbjct 111850 GCCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAATCGGC 111909 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| ||||||||||| ||||| || || | ||||| || || | || Sbjct 111910 GAGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCGCTGCTGGTCCGGGGG 111969 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | || || || | | |||||| ||| ||| | Sbjct 111970 AATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCTATGGTGTCG-GAGCTCTCCA 112028 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || |||||||| ||||| |||||||| || || ||||| || Sbjct 112029 CCTCCAGGGTGATGGTTTTTCCAGTTAGGGTTTTCACGAAGATCTGCATCTT 112080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | ||| | ||||| || |||||| || | |||||||||| Sbjct 153119 CCTCCACGGAGCCTGAGCACGAGATGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGCA 153178 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||||||||| || || || || | | ||| || || | || Sbjct 153179 AGGGTACGACCGTCCTCCAATTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGA 153238 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| ||| | || || || ||| |||||| ||| ||| | Sbjct 153239 ATGCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTGTCAATCGTGTCG-GAGCTCTCCA 153296 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| ||||||||||| || ||||| Sbjct 153297 CCTCCAAGGTGATCGTCTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 153345 >seq762 Length=331234 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| || | |||||| || | || ||||||||| | |||||||| | Sbjct 300921 CCTCCACGCAATCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATGTTGTAATCAGCT 300862 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || ||||| || ||||| |||||||||| | |||||| || | || Sbjct 300861 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 300802 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || |||| ||||||| | ||| || || ||| ||| || Sbjct 300801 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAG-AGCTCTCAAC 300743 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| | || || ||||||||||||||| Sbjct 300742 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATT 300694 >seq5462 Length=105758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || |||| | || | || | |||| ||| || || | |||||| |||| Sbjct 6549 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 6490 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| ||||| || || ||||| || ||||||||||| ||||||| || Sbjct 6489 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGAGG 6430 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | || || || | | |||||| ||| ||| | Sbjct 6429 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGG-AGCTCTCCA 6371 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 | || | || || || || ||||| ||||||||||| || || ||||| || || Sbjct 6370 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCATCTTTTT 6316 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | ||| | ||||| ||| ||| || || | |||||||||| Sbjct 7004 CCTCCACGGAGCCTGAGCACGAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCGGCG 6945 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||||||||| ||||| || || | | ||| || || | || Sbjct 6944 AGGGTACGACCGTCCTCCAATTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGA 6885 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| || | || || || ||| |||||| ||| ||| | Sbjct 6884 ATGCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTGTCAATCGTGTCGG-AGCTCTCTA 6827 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| ||||||||||| || ||||| Sbjct 6826 CCTCCAAGGTGATCGTCTTCCCGGTTAGGGTTTTCACAAAGATCTGCAT 6778 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || ||||||| ||| | ||| ||||| || | ||| ||||||| Sbjct 92159 CCTCCACGGAGCCTCAACACCAGATGCAGAGTCGATTCCTTCTGAATATTATAATCGGCG 92100 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || || ||||| ||||| || || | | ||| || || | || Sbjct 92099 AGGGTGCGACCGTCCTCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 92040 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 92039 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCCAC 91981 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || |||||||||||||| |||||||| || || ||||| || Sbjct 91980 CTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 91930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381182957241048