Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12080 140 4e-28 seq13333 98.7 1e-15 >seq12080 Length=19512 Score = 140 bits (154), Expect = 4e-28 Identities = 252/366 (69%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| ||||| || |||| || || |||||||| || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||||| || |||||||| ||||||||||| | |||| || ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 8426 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || || ||||| || || ||||| | | | | | | | || Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTCGAT 8366 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| | ||||| ||||||||||| || ||||| | || || || || | || Sbjct 8365 CCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAA 8306 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || ||| || || || || | ||| || |||| ||| ||||| |||||||| Sbjct 8305 CAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTC 8246 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || || || ||||| || || |||||| | ||||| | |||||| Sbjct 8245 GGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTG 8186 Query 42424 TACTTC 42429 || || Sbjct 8185 GACCTC 8180 >seq13333 Length=25420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||||||| ||||| || || ||| || || | ||| |||||| || | || || Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAA 72034 ||| | ||||| ||||| | ||||||||| ||||||| | ||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||||||| ||||||||| ||| ||||| | | | || |||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACGTGCACGATTCTCCTC 24728 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | |||| || || | ||| | || | | |||||||| ||| ||| Sbjct 25019 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 25078 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || || | |||||||||||| | ||| Sbjct 25079 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAGCTGAG 25138 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || ||| || | || || |||||| || ||||| ||| Sbjct 25139 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 25198 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 25199 CCTTCAATACTATCATCTTTCATG 25222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670802321678560