Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq762 100 3e-16 seq5335 93.3 4e-14 >seq762 Length=331234 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| |||||||||||||| ||| | ||||| |||||||||||| Sbjct 316883 TGAAGGGTGGATTCCTTTTGTATGTTGTAGTCGGCAAGTGTGCGACCATCTTCGAGTTGT 316824 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| |||||| | ||||| || || || || || || ||||| |||||| Sbjct 316823 TTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTG 316764 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | || ||||| | ||| | || ||||| ||| Sbjct 316763 GCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATTGTTTTGCCAGTC 316704 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 || || || || || |||||||| Sbjct 316703 AAGGTCTTCACAAAAATTTGCAT 316681 >seq5335 Length=19063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTT 143033 || ||||| | || || ||||| ||||||||||| || || ||| |||| || | Sbjct 7990 ACCAAATGCAAGGTGGACTCTTTCTGTATGTTGTAGTCAGCCAATGT--TCGACCATCCT 8047 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | || || || |||||| ||||||| | |||||||| ||||| || ||||| ||||| Sbjct 8048 CAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTT 8107 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 ||||| ||| | | || | ||||| | | ||| ||||| | ||| | |||| Sbjct 8108 GTATTTTCGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACTTCCAAAGTAATTGTCT 8167 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || | ||||| || ||||| |||||| Sbjct 8168 TTCCTGTAAGAGTTTTAACAAATATCTGCATA 8199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506759904121920