Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12080 138 2e-27 >seq12080 Length=19512 Score = 138 bits (152), Expect = 2e-27 Identities = 585/897 (65%), Gaps = 59/897 (7%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || ||| | || || ||||| |||||||| ||||| ||||||| || | Sbjct 7971 TGTTTCCAATTCAGTACCCGGAGATATGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCT 8030 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGAC 125113 |||| | ||| ||||||||||| ||| ||| ||||| | ||||| | | | || Sbjct 8031 GGACCGCCGAGGAGGTCGATCTCTCCGGCGAC--GTACGTCACTGGGAAAACC---TAAC 8085 Query 125114 TGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 || ||| |||||| || || | ||| | | |||||||| |||| |||||| | Sbjct 8086 CGA---TGA-CGAGAGGCACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACG 8141 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGT 125227 | ||||| || |||||| | | ||| | ||| | | ||| || | |||| Sbjct 8142 GCATCGTTTTGGAGAATCTGGCGGGGAGGTTC-ATGAAG-GAGGTCCAGGTTTCGGAGG- 8198 Query 125228 GTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTA 125286 ||| ||||| || || ||||| || ||| |||||| | ||||| ||||||||| | Sbjct 8199 CTCGCGCTTTCTATGGCTTCCAGATTGCGATCGAGAACATCCACTCCGAAATGTACAGTC 8258 Query 125287 CACTGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATC 125345 || | || | || || || || || | || || ||| || |||| || Sbjct 8259 TCTTGCTCGAGACCTATATCAAGGACTCGGCCGAG-AAGAACCGGCTGTTCCACGCGATG 8317 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC-GA 125404 || || || || | | || ||||| | |||| | ||||||||||| | | || Sbjct 8318 GAGACCGTTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGA 8377 Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || |||| ||| || || || | || ||||| ||| || ||||| ||||| || Sbjct 8378 GAA----TCGTTCGCGGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTC 8433 Query 125465 GGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 || || || ||| || || |||||||| || |||||||| | |||||||| | || Sbjct 8434 CGGAAGCTTCTGC-GCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCT 8492 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT----TGCC-ATTCT 125578 | |||||||| || || |||||||| || || ||||| || || |||| ||| Sbjct 8493 TCTCCAACGAGTTGATCTCGCGAGACGAAGGTCTCCACTGCGATTTCGCGTGCCTGCTCT 8552 Query 125579 A----CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCA 125634 | || || ||||| | ||| | |||| || | ||| || |||| ||| Sbjct 8553 ACACTCTCTTGCGCAAGAAGCTGAG---CGAG----GAGC--GCG-TG--AAGGCTATC- 8599 Query 125635 ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCA 125694 || ||| || ||| ||||| |||||| | ||| | || || | Sbjct 8600 -----GTCCGCGACGCGGTGGATATAGAGAGGGAGTTTGTGTGCGACGCGCTGCCCTGCG 8654 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 || |||| |||||| || | || ||| || ||||||| ||||||||||| ||| | | Sbjct 8655 CGTTGGTTGGGATGAACGGCGATCTGATGAGCCAGTACATCGAGTTTGTGGCGGATAGGC 8714 Query 125755 TACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-G 125813 | || || |||| | |||| || ||| | | |||| || ||||||| || | Sbjct 8715 TTTTGGGCGCGTTGGGGTGTGGCAAAATCTACGATGTTCAGAACCCATTTGATTGGATGG 8774 Query 125814 ACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | | | || || | | || |||||||| || || ||||||| || | |||||| Sbjct 8775 AACTG-ATTTCGTTGCAAGGAAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTAC 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740687225334560