Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq762 104 2e-17 seq5335 86.0 5e-12 seq2332 86.0 5e-12 seq2326 86.0 5e-12 >seq762 Length=331234 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| ||||| || ||||||||||||||||||||||| | Sbjct 317365 TTCCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCAG 317306 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||| ||| || || ||| |||| || ||||| || ||| | Sbjct 317305 CTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 317246 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || ||| || | ||| |||||| | ||| Sbjct 317245 GGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAA 317186 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| ||||| || || || || || ||||||||||||||| Sbjct 317185 CCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 317136 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| ||||||||||| |||| || | | || || ||||| Sbjct 317796 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 317737 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| ||||||| |||||||| || ||| | ||||| ||||| ||| || Sbjct 317736 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 317677 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| | ||| || | |||||||| || ||||| Sbjct 317676 TGCTTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 317617 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| |||||| Sbjct 317616 CAAGGTCTTAACAAAAATCTGCATT 317592 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| ||||| | | ||||| ||||| || |||||||||||||| |||||||| | Sbjct 300923 TTCCTCCACGCAATCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATGTTGTAATCAG 300864 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||| ||| || || ||| |||| || ||||| || ||| | Sbjct 300863 CTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 300804 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || ||| || | | | |||||| ||| Sbjct 300803 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATCAGAGCTCTCAA 300744 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || |||||||| || || || || || ||||||||||||||| Sbjct 300743 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATT 300694 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| ||||||||||| |||| || | | || || ||||| Sbjct 301354 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGGGTCCTTCCATCTTCAAGCTG 301295 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| ||||||| ||||||||||| || | ||||| ||||| ||| || Sbjct 301294 TTTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 301235 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| | || || | ||| ||||| || || || Sbjct 301234 TGCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAGGGTTATGGTCTTCCCAGT 301175 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| |||||| Sbjct 301174 CAAGGTCTTAACAAAAATCTGCATT 301150 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| | || | ||||| ||| | || || |||||||| |||||||| || | Sbjct 317137 TTCCACCTCTAAGCCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGG 317078 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | || || ||||| || || ||| | || | |||||||| || | Sbjct 317077 CTAGGGTCCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 317018 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| |||||| ||| || | ||| || || ||| Sbjct 317017 GGATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTATCGATGGTGTCAGAGCTCTCAA 316958 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | |||||||||||||| || || || || ||||||||||||||| Sbjct 316957 CTTCCAAAGTAATGGTTTTACCGGTCAAGGTCTTCACAAAAATTTGCATT 316908 >seq5335 Length=19063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| ||||| || ||||| |||| ||| | | ||||| || || || || Sbjct 8230 GTAGACTCCTTCTGAATGTTATAATCGGCCAAAGTTCGGCCATCCTCGAGTTGCTTTCCA 8289 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||||| ||| | ||| |||||||| ||||||| || Sbjct 8290 GCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTCGCCTTC 8349 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||| ||| | || ||||| || || || | || Sbjct 8350 ACATTATCTATGGTATCAGAACTCTCAACTTCAAGAGTTATGGTCTTCCCAGTGAGTGTC 8409 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 8410 TTGACGAAAATCTGCAT 8426 >seq2332 Length=86198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| |||||||| |||| ||| | | ||||| ||||| || || Sbjct 74199 GTAGATTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCA 74140 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| || ||||||||||| ||| | || |||||||| |||||| || Sbjct 74139 GCGAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTC 74080 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||| ||| | |||||||| || || || | || Sbjct 74079 ACATTATCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTC 74020 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 74019 TTGACGAAAATCTGCAT 74003 >seq2326 Length=95029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| |||||||| |||| ||| | | ||||| ||||| || || Sbjct 84754 GTAGATTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCA 84695 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| || ||||||||||| ||| | || |||||||| |||||| || Sbjct 84694 GCGAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTC 84635 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||| ||| | |||||||| || || || | || Sbjct 84634 ACATTATCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTC 84575 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 84574 TTGACGAAAATCTGCAT 84558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369907553464