Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5335 89.7 3e-13 >seq5335 Length=19063 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || |||||||| ||||| ||||| |||| ||| | | || || Sbjct 7990 ACCAAATGCAAGGTGGACTCTTTCTGTATGTTGTAGTCAGCCAATGTTCGACCATCCTCA 8049 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||||||| ||| || | | ||||| || | || || ||||| || || Sbjct 8050 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGT 8109 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | ||| || | | ||| |||||| | || ||| |||| ||| || || ||| Sbjct 8110 ATTTTCGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACTTCCAAAGTAATTGTCTTT 8169 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| || || || ||||| Sbjct 8170 CCTGTAAGAGTTTTAACAAATATCTGCAT 8198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318621589844088