Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2332 95.1 9e-15 seq2326 95.1 9e-15 seq762 95.1 9e-15 >seq2332 Length=86198 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTC 43971 |||||||| || || |||||| ||||| ||||| || | || | || |||| || Sbjct 74667 ACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGC-CATCTTC 74609 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTG 44030 | |||||||| || ||||||| || || ||||| | || | ||||||||||| ||| Sbjct 74608 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCCTG 74549 Query 44031 AAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || |||||| | | ||| | ||| |||||| | ||| || || | ||||| || Sbjct 74548 AA--TTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCGACCTCAAGAGTAATAGTC 74491 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||| ||||| |||||||| Sbjct 74490 TTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 74459 >seq2326 Length=95029 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTC 43971 |||||||| || || |||||| ||||| ||||| || | || | || |||| || Sbjct 85222 ACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGC-CATCTTC 85164 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTG 44030 | |||||||| || ||||||| || || ||||| | || | ||||||||||| ||| Sbjct 85163 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCCTG 85104 Query 44031 AAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || |||||| | | ||| | ||| |||||| | ||| || || | ||||| || Sbjct 85103 AA--TTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGAGTAATAGTC 85046 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||| ||||| |||||||| Sbjct 85045 TTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 85014 >seq762 Length=331234 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| || ||||| || || || ||| | | || |||| || Sbjct 316890 CACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCGGCAAGTGTGCGACCATCTTC 316831 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||| ||||||| |||||||| | || | ||| || || ||| Sbjct 316830 GAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTG 316771 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| || ||| || || | ||| || || | ||||||||||| Sbjct 316770 AATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATTGTTTT 316711 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| |||||||| Sbjct 316710 GCCAGTCAAGGTCTTCACAAAAATTTGCAT 316681 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||| ||||||||||| ||||| ||| | |||| || Sbjct 317346 CACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCAGCTAAGGTCCTTCCATCTTC 317287 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || ||||| |||| || || |||||| | || | ||| || || ||| Sbjct 317286 CAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 317227 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || ||| || || | | |||||||| ||| || || | ||||||||||| Sbjct 317226 GATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTTTT 317167 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| ||||| |||||||| Sbjct 317166 GCCAGTCAAGGTCTTAACAAAAATTTGCAT 317137 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| || ||||| ||||| || ||| || || |||| || Sbjct 317118 CACCAGGTGGAGGGTGGATTCCTTTTGGATATTGTAGTCGGCTAGGGTCCGACCATCTTC 317059 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| ||||||| |||||||| | || | || || || ||| Sbjct 317058 AAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTG 316999 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| || | | || || | ||| || || | ||||| ||||| Sbjct 316998 AATTTTGGCTTTGACATTATCGATGGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTTTT 316939 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || ||||||||||| |||||||| Sbjct 316938 ACCGGTCAAGGTCTTCACAAAAATTTGCAT 316909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354603971399088