Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq762 113 4e-20 seq6121 98.7 8e-16 seq4898 98.7 8e-16 seq2332 86.0 5e-12 seq2326 86.0 5e-12 >seq762 Length=331234 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || || | || |||||| || || || || || ||||| ||||||||||| Sbjct 300923 TTCCTCCACGCAATCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATGTTGTAATCAG 300864 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || | ||||||||| || ||||| ||| |||| ||||||||||| || | Sbjct 300863 CTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTG 300804 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158 | | || |||||||| || || ||| || | ||| || ||| || | || Sbjct 300803 GGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATAGTATC-AGAGCTCTCA 300745 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || ||||||||||||||||| || || ||||||||||||||| Sbjct 300744 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAAATTTGCATT 300694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || ||||| || |||||||| ||| || | |||||| | ||| Sbjct 301353 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGGGTCCTTCCATCTTCAAGCTGT 301294 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| ||||||||||||| ||||| || | || || ||||| ||| ||| Sbjct 301293 TTGCCTGCAAAAATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTTT 301234 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | ||| |||| ||| ||||| || || ||| Sbjct 301233 GCTTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAGGGTTATGGTCTTCCCAGTC 301174 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || |||||||| |||||| Sbjct 301173 AAGGTCTTAACAAAAATCTGCATT 301150 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || ||||| || |||||||| ||| ||| | |||||| | ||| Sbjct 317795 TGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGT 317736 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| ||||||||||||| || || ||| | || || ||||| ||| ||| Sbjct 317735 TTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 317676 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | || |||| |||||||| || || ||| Sbjct 317675 GCTTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGTC 317616 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || || |||||||| |||||| Sbjct 317615 AAGGTCTTAACAAAAATCTGCATT 317592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || ||||| || || || || |||||||| | | ||| | |||||| Sbjct 301132 CACCAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGAGTCCTTCCATCTTC 301073 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || ||||| ||| | |||||||| || || || || | ||||| ||||| Sbjct 301072 AAGCTGCTTGCCTGCAAATATAAGCCTTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTG 301013 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || ||| ||||| | | ||| || ||| ||| |||| ||| |||||||| Sbjct 301012 TATCTTTGCCTTCACATTGTCAATAGTATCTGAGCTTTCAACCTCCAAGGTTATGGTTTT 300953 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||||| || || || |||||||||||| Sbjct 300952 CCCAGTCAAAGTCTTCACGAAAATTTGCATT 300922 >seq6121 Length=68638 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| || | ||||| |||| || ||||| || || ||||| ||| Sbjct 3104 TTAATCATAGTTCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTCGACTCCTTTTGGATG 3045 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||| || || ||| |||| ||||||||| Sbjct 3044 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGT 2985 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | ||||| ||||| Sbjct 2984 TGGTCCGGGGGGATACCTTCCTTGTC 2959 >seq4898 Length=109433 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| || | ||||| |||| || ||||| || || ||||| ||| Sbjct 54501 TTAATCATAGTTCCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATG 54442 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||| || || ||| |||| ||||||||| Sbjct 54441 TTGTAATCAGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGT 54382 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | ||||| ||||| Sbjct 54381 TGGTCTGGGGGGATACCTTCCTTGTC 54356 >seq2332 Length=86198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | ||| | |||||||| || ||||| ||||| || ||||| || || Sbjct 74687 TTCCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG 74628 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| | |||||| | ||||| || || | || ||||||||||| || | Sbjct 74627 CCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTG 74568 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158 | | |||||||| || ||||||| || || | | ||| || ||| || | || Sbjct 74567 GAATACCTTCTTTATCCTGAATTTTTGCCTTAACATTGTCAATAGTATC-AGAGCTCTCG 74509 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| || ||||| || | || || ||||| ||||||||| Sbjct 74508 ACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCATT 74458 >seq2326 Length=95029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | ||| | |||||||| || ||||| ||||| || ||||| || || Sbjct 85242 TTCCTCCGCGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAG 85183 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| ||| | |||||| | ||||| || || | || ||||||||||| || | Sbjct 85182 CCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTG 85123 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCC 20158 | | |||||||| || ||||||| || || | | ||| || ||| || | || Sbjct 85122 GAATACCTTCTTTATCCTGAATTTTTGCCTTAACATTGTCAATAGTATC-AGAGCTCTCA 85064 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| || ||||| || | || || ||||| ||||||||| Sbjct 85063 ACCTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCATT 85013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419381853499836