Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5335 104 2e-17 seq2332 95.1 1e-14 seq2326 95.1 1e-14 seq8531 93.3 4e-14 seq3733 91.5 1e-13 seq5462 86.0 5e-12 seq5374 84.2 2e-11 >seq5335 Length=19063 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| |||||||||||||||||||||||||||||||||| || | || || ||||| Sbjct 7311 ATGCAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTG 7370 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | || ||||||||| ||| || Sbjct 7371 CTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTT 7430 Query 48643 CTGCTT----GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTAC 48698 |||| | || | |||||||||| |||| ||| | || || || || | Sbjct 7431 -AGCTTTCACGTTA---TCGATGGTATCGGAGCTCTCCACCTCAAGAGTGATTGTCTTCC 7486 Query 48699 CGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||||||||||||||||||||| Sbjct 7487 CAGTCAGAGTTTTCACAAAAATCTGCAT 7514 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || ||||| |||||| |||||||| ||||| ||||| ||| | ||||| || ||| Sbjct 8224 TGGAGTGTAGACTCCTTCTGAATGTTATAATCGGCCAAAGTTCGGCCATCCTCGAGTTGC 8283 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| || | ||||||||| || | | ||| |||||| ||||||| Sbjct 8284 TTTCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGAATTTTC 8343 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | |||||||||| | | ||| || | |||||||| || || ||| Sbjct 8344 GCCTTCACATTATCTATGGTATCAGAACTCTCAACTTCAAGAGTTATGGTCTTCCCAGTG 8403 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||||||| Sbjct 8404 AGTGTCTTGACGAAAATCTGCATC 8427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||||||||||| || || ||||| || | ||| ||| || | |||||||||| Sbjct 7083 ATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCTG-CAAGTGTGCGACCATCCTCCAGCT 7141 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || | | ||||||||| || | | ||||||||| ||| | Sbjct 7142 GCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCT 7201 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | |||||||| | |||| ||||| ||| || || || || | Sbjct 7202 TTGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCGAGTGTGATTGTCTTGCCTG 7261 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || ||||||||||||||||| Sbjct 7262 TTAACGTCTTCACAAAAATCTGCAT 7286 >seq2332 Length=86198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||| ||||| ||| | ||||| |||||||| || || || Sbjct 74193 TCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 74134 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | ||||||||| || | | ||| |||||| |||||| ||| | | Sbjct 74133 ATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTA 74074 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 |||| ||||| | | ||| || | || ||||| || |||||||| || || || Sbjct 74073 TCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACG 74014 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 74013 AAAATCTGCATC 74002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || || ||| || || || ||||||||||||||||| || | |||||| Sbjct 73983 ACTAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCCAAAGTACGACCATCCTCC 73924 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||| || || | | || | | |||||| || || | | ||||||||| | Sbjct 73923 AACTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGA 73864 Query 48638 ATTTTCTGCTT-GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||||| || | | || ||||| | ||| ||||| |||||||| || Sbjct 73863 ATTTT-TGCTTTGACATTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTTATGGTCTT 73805 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||| ||||| ||||||||| Sbjct 73804 TCCAGTGAGAGTTTTGACAAAGATCTGCATC 73774 >seq2326 Length=95029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||| ||||| ||| | ||||| |||||||| || || || Sbjct 84748 TCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 84689 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | ||||||||| || | | ||| |||||| |||||| ||| | | Sbjct 84688 ATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTA 84629 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 |||| ||||| | | ||| || | || ||||| || |||||||| || || || Sbjct 84628 TCTATTGTATCAGAACTCTCAACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACG 84569 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 84568 AAAATCTGCATC 84557 >seq8531 Length=99579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| | | || || ||||||||||||| Sbjct 90773 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGC-CGTCCTCCAGCTG 90831 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || |||||||| || || | | ||||||||| || || Sbjct 90832 CTTTCCTGCAAAGATCAACCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTT 90891 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || |||||||| | | |||| ||| | || ||||| || ||| Sbjct 90892 CGCCTTCACGTTGTCG--ATGGTATCCGAACTCTCCACCTCCAAGGTAATGGTCTTTCCG 90949 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || |||||||| Sbjct 90950 GTGAGAGTCTTAACGAAGATCTGCAT 90975 >seq3733 Length=159728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || ||||| ||||| || || | || |||| |||| |||| Sbjct 153599 TGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGGCCGTCTTCCAACTGC 153658 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || ||||||||||| ||| | | |||||||||| || || Sbjct 153659 TTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTG 153718 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| |||| |||| ||| | || ||||| || |||| Sbjct 153719 GCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGG 153776 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||||||||| || ||||||||| Sbjct 153777 TCAGAGTTTTCACGAAGATCTGCATC 153802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| ||||| | || || || ||| || || ||||||||||| || Sbjct 111851 CCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAATCGGCG 111910 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||||| || |||||| || | || | |||||||| ||| || Sbjct 111911 AGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCGCTGCTGGTCCGGGGGA 111970 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| || || ||| | ||||||| |||| |||| | Sbjct 111971 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCTATGGTGTCGGAGCTCTCCACC 112030 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || |||||||| || || || |||||||| || ||||||||| Sbjct 112031 TCCAGGGTGATGGTTTTTCCAGTTAGGGTTTTCACGAAGATCTGCATC 112078 >seq5462 Length=105758 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || ||||| ||||| || || | || |||| |||| |||| Sbjct 6524 TGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGGCCGTCTTCCAACTGC 6465 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || ||||||||||| || | | ||||||||| || || Sbjct 6464 TTTCCGGCGAAGATCAATCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCTTGGATCTTG 6405 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| |||| |||| ||| | || ||||| || |||| Sbjct 6404 GCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGG 6347 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGAGTGATGTG 48755 | ||||||||||| || ||||||||| | | |||| | ||| |||| ||| || Sbjct 6346 TCAGAGTTTTCACGAAGATCTGCATC-TTTTTTGAGAG-AGAGAGAGAGATTTG 6295 >seq5374 Length=100071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| | | || || ||||||||||||| Sbjct 30512 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGC-CGTCCTCCAGCTG 30454 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| || || | | ||||||||| || || Sbjct 30453 CTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTT 30394 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || |||||||| | | |||| ||| | || ||||| || ||| Sbjct 30393 CGCCTTCACGTTGTCG--ATGGTATCCGAACTCTCCACCTCCAAAGTAATGGTCTTTCCG 30336 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || |||||||| Sbjct 30335 GTGAGGGTCTTAACGAAGATCTGCAT 30310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421045039136156