Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3981 114 7e-21 seq7282 113 2e-20 seq5381 111 8e-20 seq3129 109 3e-19 seq7813 107 1e-18 seq7069 107 1e-18 seq8515 105 3e-18 seq2302 105 3e-18 seq63 105 3e-18 seq2049 104 1e-17 seq1750 104 1e-17 seq514 104 1e-17 seq8497 102 4e-17 seq4536 102 4e-17 seq253 102 4e-17 seq2267 100 1e-16 >seq3981 Length=59768 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | ||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 916 AATTGGCCCATGCAGGTATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 857 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 856 AACTGAGCTAATAGGCC 840 >seq7282 Length=19131 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||||||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 6711 TTAAGAAAAAATCAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 6770 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| |||||||||| |||| Sbjct 6771 GCACGACGCTCTAACCAGCTGAGCTAATAGGCC 6803 >seq5381 Length=19462 Score = 111 bits (122), Expect = 8e-20 Identities = 88/106 (83%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGAC 11483 |||| ||| || ||| || ||| |||| ||||||||| ||| |||||||| |||| Sbjct 15294 GAAAAATAAAAATAAAAATAAAATAAATGTTTTGGCCCATGCAAGTCTCGAACCTGCGAC 15353 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 15354 CTTCGCGTTATTAGCACAACGCTCTAACCAACTGAGCTAATAGGCC 15399 >seq3129 Length=44969 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 22869 AAAATTTTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 22928 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 22929 TCTAACCAACTGAGCTAATAGGCC 22952 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 21670 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 21729 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 21730 GCTGAGCTAATAGGCC 21745 >seq7813 Length=21491 Score = 107 bits (118), Expect = 1e-18 Identities = 80/92 (87%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| ||| || |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 18687 AATAAAATGAATTAA-TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 18745 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| |||| |||||||||| ||||| Sbjct 18746 ACGACGCTCTAACCAGCTGAGCTAATAGGCCG 18777 >seq7069 Length=6165 Score = 107 bits (118), Expect = 1e-18 Identities = 80/94 (85%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||||||| || ||||||||| | | |||||||| ||||||||||||||||| Sbjct 732 AACAAAAAATCAGATATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 673 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| |||| |||||||||| ||||| Sbjct 672 GCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 639 >seq8515 Length=18226 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 13914 AAATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 13973 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 13974 CCAACTGAGCTAATAGGCC 13992 >seq2302 Length=200962 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||| ||||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 185056 AACAAAATATCAATACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 184997 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 184996 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 184966 >seq63 Length=94446 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| | | ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 72100 TAAATATTAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 72041 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 72040 CGCTCTAACCAGCTGAGCTAATAGGCC 72014 >seq2049 Length=341330 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 58396 AAAAATAAATTTTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 58455 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 58456 GACGCTCTAACCAGCTGAGCTAATAGGCC 58484 >seq1750 Length=512930 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 63794 AATAAGAAGGAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 63853 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 63854 GACGCTCTAACCAGCTGAGCTAATAGGCC 63882 >seq514 Length=187398 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11445 AAAAATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 138830 AAAAATCACCAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 138771 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 138770 GACGCTCTAACCAGCTGAGCTAATAGGCC 138742 >seq8497 Length=36271 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 20536 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20595 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 20596 CAGCTGAGCTAATAGGCC 20613 >seq4536 Length=225423 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 120009 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 120068 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 120069 CAGCTGAGCTAATAGGCC 120086 >seq253 Length=20157 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11472 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11413 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 11412 TGAGCTAATAGGCCG 11398 >seq2267 Length=59094 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 31277 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 31336 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 31337 TGAGCTAATAGGCC 31350 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261363225879856