Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13675 140 5e-29 seq9304 140 5e-29 seq7486 136 6e-28 seq8768 111 2e-20 seq3971 95.1 2e-15 seq13762 87.8 3e-13 seq5125 84.2 3e-12 >seq13675 Length=9268 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| |||||||| ||||| || || |||||| ||||||| | || Sbjct 6228 TCTTCGCGATAACATCCAGGGAATCACGAAGCCCGCGATTCGTCGTTTGGCTCGCAGAGG 6287 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| || || || |||| || |||| |||| || | |||||||| Sbjct 6288 TGGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTT 6347 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || |||| ||| || | ||| || |||||||| | | | ||||| || Sbjct 6348 CTTGGAGAATGTGATCCGTGACGCCGTGACCTACACTGAGCACGCAAGAAGGAAGACCGT 6407 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| ||||||| || ||||| | ||||| | | | ||||| || || Sbjct 6408 GACGGCTATGGATGTCGTCTACGCCTTGAAGAGGCAAGGAAGGACCCTCTATGGGTTCGG 6467 Query 16693 AAGTTAA 16699 ||||| Sbjct 6468 CGGTTAA 6474 >seq9304 Length=45481 Score = 140 bits (154), Expect = 5e-29 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| |||||||| || || || ||| |||| | ||||| |||||| Sbjct 34429 GATAACATCCAGGGAATTACCAAGCCTGCCATTCGGCGTTTGGCCAGGCGTGGCGGAGTC 34370 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||| | || Sbjct 34369 AAGCGTATCAGCGGTCTTATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCTTGGAG 34310 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | ||| |||||||||||| || ||||| || || || Sbjct 34309 AACGTGATTCGCGATGCTGTGACCTACACCGAGCACGCTCGCCGCAAGACCGTTACTGCC 34250 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | | ||||| |||||| ||||| Sbjct 34249 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGAGGTTAA 34190 Score = 140 bits (154), Expect = 5e-29 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| |||||||| || || || ||| |||| | ||||| |||||| Sbjct 37719 GATAACATCCAGGGAATTACCAAGCCTGCCATTCGGCGTTTGGCGAGGCGTGGCGGAGTC 37660 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| |||| || | ||||||||| | || Sbjct 37659 AAGCGTATCAGCGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCTTGGAG 37600 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||| | ||| |||||||||||| || |||||||| || || Sbjct 37599 AACGTGATTCGCGATGCCGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTTACTGCC 37540 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||||| | || ||| | | | |||||||||||| ||||| Sbjct 37539 ATGGATGTTGTTTACGCTTTGAAGAGGCAGGGCAGGACTCTCTATGGTTTTGGAGGTTAA 37480 >seq7486 Length=92725 Score = 136 bits (150), Expect = 6e-28 Identities = 177/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| |||||||||||||| ||||| || || ||||||| | ||| Sbjct 51355 CTTCGCGATAACATCCAGGGAATCACCAAGCCCGCTATTCGCCGATTGGCTCGCAGGGGT 51414 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || || || |||| || |||| |||| || | ||||||||| Sbjct 51415 GGAGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 51474 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | ||| || |||||||| | | ||||| || Sbjct 51475 TTGGAGAACGTGATTCGCGACGCCGTGACCTACACGGAGCACGCAAGGAGGAAGACCGTG 51534 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| |||||||||| ||||| | ||||| | | | || |||||||| Sbjct 51535 ACGGCCATGGACGTCGTCTATGCCTTGAAGAGGCAAGGAAGGACTCTCTACGGTTTTGGG 51594 Query 16694 AGTTA 16698 |||| Sbjct 51595 GGTTA 51599 >seq8768 Length=25620 Score = 111 bits (122), Expect = 2e-20 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| |||||||| |||||||| || |||||| ||||||| | || Sbjct 22610 TCTCCGTGATAACATCCAGGGAATCACAAAGCCAGCCATTCGTCGTTTGGCTCGCAGAGG 22669 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || ||| | |||| || |||| |||| || | |||||||| Sbjct 22670 AGGAGTGAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGAGTGCTCAAGATCTT 22729 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| || ||| || ||| | || || |||||||| || |||||||| Sbjct 22730 TCTTGAGAATGTGATCAGGGACGCTGTGACTTACACAGAGCACGCGCGTCGCAAGACTGT 22789 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 22790 GACTGCTATGGATGTTGTGTATGC 22813 >seq3971 Length=65214 Score = 95.1 bits (104), Expect = 2e-15 Identities = 153/220 (70%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || || ||| || ||||| | | || Sbjct 56044 TCTTCGCGATAACATCCAGGGGATCACAAAGCCTGCGATTCGTTGTTTGGCTTGCAGGGG 56103 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| | || || | || || |||| |||| || | |||||||| Sbjct 56104 TGGAGTGAAGCGTATTAGCGGTCTGATATACGAGGAGACACGTGGCGTCCTCAAGATCTT 56163 Query 16573 CCTCAAGACCGTTAT-CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | ||| || || |||||| ||| || ||||| || || | ||||| | Sbjct 56164 TTTGGAGAATGTAATGCCATGA--------CCTACACTGAGCATGCGAAGAGGAAGACCG 56215 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 | || |||||||| | ||||||| ||||| | ||||| Sbjct 56216 TGACGGCCATGGATGTTATCTATGCCTTGAAGAGGCAAGG 56255 >seq13762 Length=5857 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || |||||||| |||||||| || ||| | |||| | | || |||| Sbjct 5767 GAGATAACATTCAGGGAATCACAAAGCCAGCCATTCGTAGATTGGCGAGGAGAGGAGGAG 5708 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || || | |||| || || | | | || | ||||||||| | Sbjct 5707 TCAAGAGGATCAGCGGCCTCATCTACGAGGAAACCAGAGGAGTCCTCAAGATCTTCTTGG 5648 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || | || ||||||||||||| | || ||||| ||| Sbjct 5647 AGAACGTGATCCGTGACGCCGTGACTTACACCGAGCACGCTAGGAGGAAAACTGTGACCG 5588 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | || || | | | ||||||||||| ||| Sbjct 5587 CCATGGATGTGGTTTACGCGCTCAAGAGGCAGGGAAGGACCTTGTATGGTTTTGGGGGTT 5528 Query 16698 AAT 16700 || Sbjct 5527 GAT 5525 >seq5125 Length=25985 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||| || || || | | |||| ||||| |||| Sbjct 1841 GATAACATCCAGGGAATTACGAAGCCTGCCATACGGCATTTGGCCAAGCGTGGCTTAGTC 1900 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || | | |||| || |||| ||| ||| | ||||||||| | || Sbjct 1901 AAGCGTATCAGCAGGCTCATCTAGGAGGAGACATGTGGTGTCCTCAAGATCTTCTTGGAG 1960 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || || | | ||| || |||||||| ||||||||||| || | Sbjct 1961 AACGTGATTTGCAATTTTGTGACCTACACTGAGCACGCCTGCCGTAAGACTGTTACTACT 2020 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| ||||| | || || | | | ||||||||||| |||| Sbjct 2021 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGTAGGACTCTCTATGGTTTTGGGGGTTA 2079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79038485088108