Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq40156 609 3e-169 seq5990 607 1e-168 seq9596 197 2e-45 seq6232 192 7e-44 seq2250 100 4e-16 seq388 96.9 4e-15 >seq40156 Length=57058 Score = 609 bits (674), Expect = 3e-169 Identities = 746/1010 (74%), Gaps = 14/1010 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| |||||||| || ||| | || | Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || ||||| ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| || || || |||||| | ||| | |||||| || ||| | || || || | Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCGGCAG 5555 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | || ||| | | |||| |||||||| || | | Sbjct 5556 TTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCAC 5615 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | || || || ||||||||||| || ||||||| Sbjct 5616 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 5675 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || |||||| | || || ||||| | |||| |||| | | Sbjct 5676 GCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTT---C 5732 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || |||||||||||||||| ||| || ||||| || || || | Sbjct 5733 AATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 5792 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| | ||||| || ||||||||||||| ||| |||||||| |||| Sbjct 5793 TCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAG 5852 Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || |||| |||| || |||| ||||||| ||||| ||||| | ||||| | Sbjct 5853 CTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCAT 5909 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || ||| | | || | ||| || || || ||||||||||||| Sbjct 5910 TTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTG 5969 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||||||||| | ||||||||| || ||||||| || || ||| Sbjct 5970 CTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTA 6029 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||| Sbjct 6030 ACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 6089 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || | Sbjct 6090 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAG 6149 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTT-GCTCTTAACCTACGAGCG 138707 | | ||| | |||| ||| | |||| | || | | ||| ||||| |||||||| || Sbjct 6150 TAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCC 6208 Query 138708 TATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTAC 138767 ||||| ||||| || || ||||| |||||||| |||||||||||||| ||||| |||||| Sbjct 6209 TATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTAC 6268 Query 138768 ACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCT 138827 ||||| || |||||| | |||||||| | ||||| |||||||| || ||||| ||| Sbjct 6269 ACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCT 6328 Query 138828 CACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || |||||| || | || ||||| || || | || | || |||||||| Sbjct 6329 CATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 607 bits (672), Expect = 1e-168 Identities = 716/960 (75%), Gaps = 12/960 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | ||||||| || |||| || || | || |||||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| |||||||||| ||| | | Sbjct 10073 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTACTC 10130 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || ||||||||| |||| |||||| | |||||||||| Sbjct 10131 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 10190 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCT--AGCAACGCCATCGGCCTTCACTTCTATCC 135609 | || || |||||||| |||| ||| || ||| || || || ||||||| || || Sbjct 10191 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTTCACTTTTACCC 10248 Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669 || |||||||||| ||| ||||||| ||| |||| ||||| ||||||||| | ||| | Sbjct 10249 AATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAAT 10308 Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729 || | |||||| | | ||||| | ||| ||||||| ||||||||||| || Sbjct 10309 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTT 10368 Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| || |||||||||||||||||| ||| || || ||||| || ||||| | ||| || Sbjct 10369 CCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAAC 10428 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849 |||||||||| || | || ||| |||| ||||| || ||| |||||||| || || Sbjct 10429 TGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 10488 Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909 |||||||| ||||| |||| |||| |||| |||||||| || |||||||| || ||||| Sbjct 10489 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 10548 Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969 || || |||||||| || || ||||| || |||| ||||| || ||| ||||||||| Sbjct 10549 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCA 10608 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| | | || || |||||| | | | || || || || ||||| ||| | Sbjct 10609 TGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGA 10668 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||||||||| ||||| ||||| || || || |||||||||||||| || Sbjct 10669 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 10728 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || |||| ||||||||||| |||||||| |||||||| |||| || ||||| Sbjct 10729 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCT 10788 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCG 136207 || ||||||||||| || ||||||||||| |||| | | ||||| || ||||| Sbjct 10789 AGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAG--GTATCAGCACTATGGCT 10846 Query 136208 TTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTC 136267 |||||| | ||||| ||||| |||||||| || | || | | |||||| |||| | Sbjct 10847 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATT 10906 Query 136268 AACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || |||||||| || | | ||||||||| || |||||||| || ||||| || ||| Sbjct 10907 AATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 10966 >seq9596 Length=34882 Score = 197 bits (218), Expect = 2e-45 Identities = 214/281 (76%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 138598 TTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTC 138657 |||||||| ||||| |||||| | || ||||||||| | ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 138658 TCTGGACTAGTAGTATTGGTATTATTGGTCTTG-CTCTTAACCTACGAGCGTATGATTTC 138716 | |||| ||| | |||| | || | | |||| |||| |||||||| || ||||| ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 138717 GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAAC 138776 || || || ||||| |||||||| |||||||||||||| ||||| ||||||||||| || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 138777 ATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAAC 138836 |||||| | |||||||| | ||||| |||||||| || ||||| ||||| |||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 138837 TTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || | || ||||| || || | || | || ||| |||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCT 5638 >seq6232 Length=104065 Score = 192 bits (212), Expect = 7e-44 Identities = 242/325 (74%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 135389 ACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTT 135448 |||||||| || ||||| || || | || |||||||| ||||||| ||||| ||| Sbjct 82879 ACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTAC-CTT 82821 Query 135449 CTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTG 135506 | | | | || |||| |||||| |||||||||| ||||| ||||| || ||||||| Sbjct 82820 ATTGACCGTAACT-TCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTG 82762 Query 135507 ACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTG 135566 | || || || ||||||||| |||| |||||| | ||||||||||| || || ||||||| Sbjct 82761 ATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTG 82702 Query 135567 CTGTTATCCCTTCT--AGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGC 135624 | |||| ||| || ||| || || || | ||||| || || || |||||||||| Sbjct 82701 CCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGG 82644 Query 135625 TTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCT 135684 ||| ||||||| ||| |||| |||| |||||||||| | ||| | || | |||||| | Sbjct 82643 TTCCGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTT 82584 Query 135685 TATCGGTGTCTTCTCTTACATGGGT 135709 | ||||| | ||| |||||| Sbjct 82583 ACTTGGTGTAGCTTGTTATATGGGT 82559 >seq2250 Length=25732 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 138714 TTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAG 138773 || || || ||||||||||||||||||||||||||| |||| ||||| ||||||||||| Sbjct 5402 TTTGTTTCTCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCTACACCAAA 5461 Query 138774 AACATTCTTCTGAATGAAGG 138793 || |||||| | |||||||| Sbjct 5462 AATATTCTTTTAAATGAAGG 5481 >seq388 Length=54843 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 138404 CCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCA 138463 ||| |||||||||||||| || || ||| | | |||| |||||| || ||||||| ||| Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 138464 TGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTA 138519 |||||| || ||||| |||||||| |||||||| || | ||||||| |||| Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTA 28224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627652791462400