Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq5990 542 8e-150 seq6232 159 1e-34 seq5685 140 9e-29 seq4685 102 2e-17 >seq5990 Length=34798 Score = 542 bits (600), Expect = 8e-150 Identities = 716/988 (72%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || | || |||| ||||| | || |||||||| || | Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | || || || || | || Sbjct 10073 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTCCT 10132 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || ||||| || ||||| || || || | |||||||| ||| Sbjct 10133 CCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAAT 10192 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| | |||||||| || || Sbjct 10193 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAATA 10252 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 10253 TGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTT 10312 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| || ||| |||||||||| || | | Sbjct 10313 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGT 10372 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 |||| ||| | || ||||| || |||||| |||| ||| | | | || |||| Sbjct 10373 CTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCT 10432 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || || |||| ||||| || ||| ||| ||||||||||| || || Sbjct 10433 GT-TTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 10491 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 10492 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10551 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| ||||||| || || || ||| ||||||||| || Sbjct 10552 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGG 10611 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 | ||||| ||||| | |||| |||||| || || ||| ||| ||| | || Sbjct 10612 TTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 10671 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 10672 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 10731 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || || Sbjct 10732 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 10791 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| | || | | || ||| |||||||||||||||| Sbjct 10792 GGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 10851 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | |||||||| || || ||||| || ||||||||| ||||| || | |||| | Sbjct 10852 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCATGTAATTAATA 10910 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | |||||| || | | ||| | |||||||| || | ||||||||||| || || |||| Sbjct 10911 CCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 10970 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTC 20275 ||||||| ||||| || || |||||||| Sbjct 10971 CTCATAATTTCCCTCTAGACTTAGCTTC 10998 >seq6232 Length=104065 Score = 159 bits (176), Expect = 1e-34 Identities = 220/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || || || ||||| ||||| | || |||||||| || | ||||| ||| |||| Sbjct 82879 ACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTA 82820 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | | ||| || ||||| | || || || || || || || || ||||| ||| Sbjct 82819 TTGACCGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGAT 82760 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || ||||| || ||||| || || || | |||||||| |||||||||||||| || Sbjct 82759 GGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCC 82700 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | |||| | || || ||||| |||||||||| || || |||||||| || | Sbjct 82699 ATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCC 82640 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATA 19604 | ||||| ||||||||||| | ||||| ||| | || |||| | ||||||||| | Sbjct 82639 GTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTT 82580 Query 19605 GGAGTAGC 19612 || ||||| Sbjct 82579 GGTGTAGC 82572 >seq5685 Length=160749 Score = 140 bits (154), Expect = 9e-29 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 20041 ATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCT 20100 |||||||||||||||||||||| ||| ||| || | || || || ||| | ||| Sbjct 78493 ATTCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG 78552 Query 20101 CCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAG 20160 | | || ||| |||||||||||||||| | |||||||| || || ||||| || |||| Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 20161 TTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTC 20219 ||||| ||||| || |||| || | || |||| | | ||| | |||||||| Sbjct 78613 TTGATAGTCAA-GGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTT 78671 Query 20220 GGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 || |||||||||| || || ||||||||||| ||||| || || |||||||| Sbjct 78672 GGTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTC 78727 >seq4685 Length=19895 Score = 102 bits (112), Expect = 2e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 19730 TGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTAT 19789 ||| |||| |||||| | |||||||||||||||| || ||||||||||| ||||| | Sbjct 6888 TGGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGT 6829 Query 19790 GTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 | | |||||||| | || ||||| ||||||||||| || || |||||| Sbjct 6828 GATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144372722661936