Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5990 473 2e-128 seq5685 143 4e-29 seq3690 89.7 8e-13 seq2753 86.0 1e-11 >seq5990 Length=34798 Score = 473 bits (524), Expect = 2e-128 Identities = 678/950 (71%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 10053 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 10111 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || | ||||| || ||||| || || || |||||||| || |||| Sbjct 10112 ATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGA 10171 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || || || || || |||||||| || |||| |||| || || Sbjct 10172 TCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATA 10231 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| | | ||||||| ||| | |||||||| Sbjct 10232 GGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGC 10291 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| || | | | | |||||| | | || | | || ||||| Sbjct 10292 GGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCAT 10351 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| |||||||||| |||||||| |||||| |||||||| Sbjct 10352 GAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 10411 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTA-CCCATTCGGTCAGGGTTCATTCTC 212027 || || | | || ||||| ||| | | || |||||| ||||| || || || Sbjct 10412 CCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATT-GGTCAAGGAAGCTTTTC 10470 Query 212028 AGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 212087 |||||||||||| |||| || || || || |||||||||||| | |||||||| || || Sbjct 10471 TGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 10530 Query 212088 ACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGC 212147 || |||||||||||||||||||| || ||| |||||| || ||| | |||| || | Sbjct 10531 GCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTC 10590 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGG 212207 ||||| ||||||||| |||| | || || ||| | ||| | |||||||| | Sbjct 10591 CCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 10650 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 || || ||| | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 10651 AAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 10710 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 ||||| ||||| || || || || | || ||||| ||||| |||||||| | Sbjct 10711 AGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCG 10770 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 |||||| |||||||| || | |||||||| | || | ||||| || || | || Sbjct 10771 TTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 10830 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 |||| |||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| Sbjct 10831 TATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 10890 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| | || || ||| |||| | || || |||| | || |||||||||||||| Sbjct 10891 TCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGA 10950 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTG 212557 ||||||||| ||| | ||||| || || ||||| || |||||||| |||| Sbjct 10951 AGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq5685 Length=160749 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||| |||||||| | |||||| | | || | ||||| ||| || | ||||| Sbjct 78503 TTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTAT 78562 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | ||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| Sbjct 78563 CAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCA 78622 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 |||| || || ||| | || |||| || |||| | || |||||||||| |||||| Sbjct 78623 AGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGT 78682 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTG 212557 ||||| ||| | ||||| || || ||||| || |||||||| |||| Sbjct 78683 TATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq3690 Length=176667 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 || ||||| |||| || ||||| || ||||||||||||||||||||||| ||| | || Sbjct 116819 TATTTGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAA 116760 Query 212526 TGCACACAACTTCCCACTTGACTTAGCATCTG 212557 ||| || || ||||| || |||||||| |||| Sbjct 116759 TGCTCATAATTTCCCTCTAGACTTAGCTTCTG 116728 >seq2753 Length=60576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 || |||| |||| || ||||| || ||||||||||||||||||||||| ||| | || Sbjct 53413 TATTTGGACTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAA 53354 Query 212526 TGCACACAACTTCCCACTTGACTTAGCATCTG 212557 ||| || || ||||| || |||||||| |||| Sbjct 53353 TGCTCATAATTTCCCTCTAGACTTAGCTTCTG 53322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807149847667360