Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq5990 484 8e-132 seq40156 390 1e-103 seq6232 120 3e-22 seq3690 86.0 7e-12 seq2753 84.2 2e-11 >seq5990 Length=34798 Score = 484 bits (536), Expect = 8e-132 Identities = 707/993 (71%), Gaps = 10/993 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| || ||| || | | ||| |||| ||||||||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| ||| |||| Sbjct 10073 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTCC 10131 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | || || || || Sbjct 10132 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAA 10191 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || || |||||||| | |||| |||| || ||||| || ||||| || || || Sbjct 10192 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAAT 10251 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| | | | || || ||||| ||||| || |||||||| || || || | Sbjct 10252 ATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGT 10311 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || || |||||| |||||||||| | | | Sbjct 10312 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCG 10371 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 ||||| ||| | |||||||| ||| ||||| ||||| || || ||| ||| ||| Sbjct 10372 TCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGC 10431 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | ||||| | ||||| || || ||||| |||||||| ||||| || Sbjct 10432 TGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 10491 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 10492 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10551 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||||||||| ||| | |||| ||| || |||||||| ||||| || Sbjct 10552 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGG 10611 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 || | || || ||| | | ||||| || || || || || || | ||| | || Sbjct 10612 TTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 10671 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 10672 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 10731 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| || ||||| ||||| |||||||| |||||||| ||||| |||||||| || Sbjct 10732 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 10791 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 | | |||||||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 10792 GGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 10851 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAG--ATT-GTAC 171560 | | || || ||||| ||||||||||| || || ||| | || | | | ||| ||| Sbjct 10852 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATAC 10911 Query 171561 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 | |||| || || |||| | || |||||||| |||||||||||||||||| | | Sbjct 10912 C----TGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 10967 Query 171621 ATGCACACAACTTCCCACTAGACCTAGCATCTG 171653 |||| || || ||||| |||||| |||| |||| Sbjct 10968 ATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 390 bits (432), Expect = 1e-103 Identities = 709/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | ||||||||||| ||| || || || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| |||||||| | || || ||| | || || ||||| ||| Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 5545 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | || | | ||||| |||||||| Sbjct 5546 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 5605 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 5606 CCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5665 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | || || | || ||||| |||||||||||| | | || ||||| |||| || Sbjct 5666 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 5725 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | |||||||| || ||||| || || Sbjct 5726 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 5785 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || ||||| |||||||| | |||||||||| || || |||||| Sbjct 5786 TCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 5845 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 |||||||| || ||||| | || | || | || || || || ||| || | || Sbjct 5846 GTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 5905 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || ||| || | || | || | ||||| || || ||| Sbjct 5906 CCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCAT 5965 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 ||||| || ||| | || || || | |||||| || | | | Sbjct 5966 GGTGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGCG 6008 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 ||| |||| ||| | || || | || || || | |||||||||||| ||| | Sbjct 6009 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTC 6064 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 6065 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6124 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 6125 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 6184 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || | || || ||||| | || || ||||| || ||||| || || | ||||| ||| Sbjct 6185 GGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 6244 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || |||||| | |||||||| || | || Sbjct 6245 GATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCT 6304 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 6305 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 6364 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 6365 CGTGGAAACGCTCTTTAA 6382 >seq6232 Length=104065 Score = 120 bits (132), Expect = 3e-22 Identities = 207/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 170744 |||||| || || | ||| |||| |||||||| || || |||||||| | ||| | | Sbjct 82874 CACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGA 82816 Query 170745 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 170804 | | || || || ||| | || ||||| ||||||||||| || ||||| || || | Sbjct 82815 CCGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTA 82756 Query 170805 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 170864 | | ||||| ||| | || ||| | | || || || || || || |||||||| | Sbjct 82755 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTA 82696 Query 170865 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 170924 |||| |||| || ||||| || ||||| || || || |||||||| | | | | Sbjct 82695 TTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTG 82636 Query 170925 ACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 170982 | || ||||| ||||| | |||||||| || || || || | |||||| | |||| Sbjct 82635 ATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 82578 >seq3690 Length=176667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 171566 TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCA 171625 |||| ||| || ||||| || |||||||| |||||||||||||||||| | ||||| Sbjct 116815 TGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCT 116756 Query 171626 CACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || || ||||| |||||| |||| |||| ||| Sbjct 116755 CATAATTTCCCTCTAGACTTAGCTTCTGTTGA 116724 >seq2753 Length=60576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 171572 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 171631 ||| || ||||| || |||||||| |||||||||||||||||| | ||||| || || Sbjct 53403 GATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATAAT 53344 Query 171632 TTCCCACTAGACCTAGCATCTGCTGA 171657 ||||| |||||| |||| |||| ||| Sbjct 53343 TTCCCTCTAGACTTAGCTTCTGTTGA 53318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569982553575840