Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq12080 86.0 7e-12 >seq12080 Length=19512 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || ||||| || || | |||||| || | || || || || || || ||||| Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 ||||||||||| || | |||||||| ||||||||| | |||| | ||| || || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAA 8426 Query 21595 AATGCCCTCAACGGCAGCAAATGC 21618 |||||| || ||| ||| || || Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGC 8402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531633812393440