Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12080 150 2e-31 seq13333 87.8 2e-12 >seq12080 Length=19512 Score = 150 bits (166), Expect = 2e-31 Identities = 382/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| ||||| ||||||| || | |||||||| || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||||| || |||||||| ||||||||||| | ||| ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAA 8425 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33479 || ||||| || ||| ||||| || || ||||| | ||| | ||| ||| Sbjct 8424 ATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTC-CGCGAACGATTCTCCGCCGTC--- 8369 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| | ||||| ||||||||||| || ||||| | || || || || | Sbjct 8368 GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTG 8309 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || || ||| || || || || | ||| || |||| ||| ||||| ||||| Sbjct 8308 GAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACAT 8249 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || || ||||| || || || ||||| || || |||||| | |||||| | || Sbjct 8248 TTCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAAC 8189 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | || | |||||| ||| || || || ||||| ||| || Sbjct 8188 CTGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGC 8129 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33779 || || || | || || | || || | | ||||| ||||| || | ||| | Sbjct 8128 GAAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTG 8069 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33839 | | || || | ||| || || || | ||||| || || ||||| ||||| || Sbjct 8068 ACGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTT 8009 Query 33840 ATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 ||||| | ||| || || || || ||||| || || Sbjct 8008 GTACATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 >seq13333 Length=25420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 |||||||| ||| | || |||||| || || | ||| |||||| || |||| || Sbjct 24559 TCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACCT 24618 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 63228 ||| | |||| ||||| | ||| ||||| ||||| | | ||| |||| || ||| | Sbjct 24619 GGAGACTCATTAGGACAAAACAATGACCATTCTCCAT--TGCTTTGAACTCTTTCCATGA 24676 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 |||||||||||| ||||||||| ||| ||||| Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATC 24710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622634511652960