Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5462 95.1 1e-14 seq2332 87.8 2e-12 seq2326 87.8 2e-12 seq762 86.0 6e-12 >seq5462 Length=105758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| |||||| | |||||| | || | || Sbjct 91930 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 91989 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 91990 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGGAC 92049 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || ||||| | || ||| ||||| | || || | | | | | || ||| ||| Sbjct 92050 CAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATTAT 92109 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| ||| | |||||||| |||| || | ||||| Sbjct 92110 AATATTCAGAAGGAATCGACTCTGCATCTGGTGTTGAGGCTCCGTGGAGG 92159 >seq2332 Length=86198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || || || || ||||| || || || | || || ||||| || ||| Sbjct 74552 GATAAAGAAGGTATTCCACCAGACCAACAGAGGCTGATATTCGCTGGAAAACAGCTTGAA 74611 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || | | | || |||||||||||||| ||||| |||||| | ||| |||| || Sbjct 74612 GATGGCAGGA-CTTTGGCTGACTATAACATTCAGAAAGAGTCTACTCTTCATTTGGTTCT 74670 Query 26981 GAGACTTAGAGGAGGAA 26997 || ||| | ||||||| Sbjct 74671 CAGGCTTCGTGGAGGAA 74687 >seq2326 Length=95029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || || || || ||||| || || || | || || ||||| || ||| Sbjct 85107 GATAAAGAAGGTATTCCACCAGACCAACAGAGGCTGATATTCGCTGGAAAACAGCTTGAA 85166 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || | | | || |||||||||||||| ||||| |||||| | ||| |||| || Sbjct 85167 GATGGCAGGA-CTTTGGCTGACTATAACATTCAGAAAGAGTCTACTCTTCATTTGGTTCT 85225 Query 26981 GAGACTTAGAGGAGGAA 26997 || ||| | ||||||| Sbjct 85226 CAGGCTTCGCGGAGGAA 85242 >seq762 Length=331234 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || || ||||| ||| | || || | ||| | || Sbjct 316680 AATGCAAATTTTTGTGAAGACCTTGACTGGCAAAACAATTACTTTGGAAGTTGAGAGCTC 316739 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | |||||| || ||| ||||| || || || || || || || Sbjct 316740 TGACACCATTGATAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCA 316799 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | ||| |||||||||||||||| | | | | |||||| || Sbjct 316800 GCAGAGGTTGATCTTTGCCGGTAAACAACTCGAAGATGGTCGCACACTTGCCGACTACAA 316859 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| ||||| || | || ||||| || | ||| |||| |||| Sbjct 316860 CATACAAAAGGAATCCACCCTTCACCTGGTGCTCCGGCTTCGAGGTGGAA 316909 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || || || || ||| | || || | ||| | || Sbjct 316908 AATGCAAATTTTTGTGAAGACCTTGACCGGTAAAACCATTACTTTGGAAGTTGAGAGCTC 316967 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | |||||| || ||| ||||| || || || || || || || Sbjct 316968 TGACACCATCGATAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCAGACCA 317027 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | |||||| || || ||||||| | | | | | |||||| || Sbjct 317028 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGGACCCTAGCCGACTACAA 317087 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| ||||| || |||| ||||| || | |||||||| |||| Sbjct 317088 TATCCAAAAGGAATCCACCCTCCACCTGGTGCTCCGGCTTAGAGGTGGAA 317137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478422135408320