Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1387 102 2e-16 seq12080 96.9 9e-15 >seq1387 Length=28451 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| ||||||||||| Sbjct 7458 CAGTTTTATGTAGCCAATGGGGAGCTGTCCTGTCAAATGTATCAGCGGTCTGCTGATATA 7399 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||||||||| |||||| ||||| ||| || || | || | | | || ||||| Sbjct 7398 GGTCTTGGTGTTCCATTTAATGTTGCATCTTATGCGTTATTGACATACATGATTGCTCA 7340 >seq12080 Length=19512 Score = 96.9 bits (106), Expect = 9e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCT 22496 ||| ||||| || ||||| ||| ||||| || | | || |||||||| | || Sbjct 8338 GAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCGTTCGCGGAGAGGCT 8397 Query 22497 TATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTG 22556 || || || ||| || |||||||||||||| || ||| || || || || ||||| Sbjct 8398 CATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCGCGATATTTTG 8457 Query 22557 GCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGA 22616 ||||||||| || | | ||||| || |||| || || || ||||| || ||||| Sbjct 8458 GCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCTCGCGAGA 8517 Query 22617 TGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 || ||||| || |||||| ||||| |||| || Sbjct 8518 CGAAGGTCTCCACTGCGATTTCGCGTGCCTGCTCTA 8553 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 || |||||||| ||||||||||| ||||| | ||||||||||||||||||| || || Sbjct 8756 AACCCATTTGATTGGATGGAACTGATTTCGTTGCAAGGAAAGACCAATTTCTTTGAGAAG 8815 Query 22918 AGAGTTGGTGAATACCAAAAAGC 22940 |||||||| || ||||| || || Sbjct 8816 AGAGTTGGGGAGTACCAGAAGGC 8838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302683026201992