Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2332 98.7 9e-16 seq762 96.9 3e-15 seq2326 95.1 1e-14 seq5462 91.5 1e-13 seq5335 87.8 2e-12 seq8531 82.4 7e-11 >seq2332 Length=86198 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || | ||||| || | ||||| | || |||||| | Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||| ||| || |||||||| || || || || || Sbjct 74518 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 74577 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||| | || || || || || ||||||| ||| | | | || || |||| Sbjct 74578 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGA-CTTTGGCTGACTATA 74636 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| ||||| ||||| ||||||| || Sbjct 74637 ACATTCAGAAAGAGTCTACTCTTCATTTGGT 74667 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || ||||| | ||||| | ||||| ||| Sbjct 74003 ATGCAGATTTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 74062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || || ||| ||||||||||| || || || ||||| Sbjct 74063 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 74122 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || || ||||| || || |||| | ||| | |||||| ||| Sbjct 74123 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 74182 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || ||||||||| Sbjct 74183 ATTCAGAAGGAATCTACA 74200 >seq762 Length=331234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | || || | || || ||| | Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | |||||| ||||| |||||||| || || || || || || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||||| | |||||||| | ||||||| || | | | ||| ||||| | Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTT-AGCTGATTACA 300872 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||| || || || | || || ||| | ||||| | |||||| Sbjct 300873 ACATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGA 300922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | ||||| | ||||| ||| | Sbjct 316908 AATGCAAATTTTTGTGAAGACCTTGACCGGTAAAACCATTACTTTGGAAGTTGAGAGCTC 316967 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| || ||| ||||| || ||||| || || || || Sbjct 316968 TGACACCATCGATAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCAGACCA 317027 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | ||| || || Sbjct 317028 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGGACCCTAGCCGACTACAA 317087 Query 24170 CATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 317088 TATCCAAAAGGAATCCAC 317105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || ||||| ||| | ||||| | ||||| ||| | Sbjct 316680 AATGCAAATTTTTGTGAAGACCTTGACTGGCAAAACAATTACTTTGGAAGTTGAGAGCTC 316739 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| || ||| ||||| || || || || || || || Sbjct 316740 TGACACCATTGATAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCA 316799 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||| || ||||||||||||| | | | ||| || || Sbjct 316800 GCAGAGGTTGATCTTTGCCGGTAAACAACTCGAAGATGGTCGCACACTTGCCGACTACAA 316859 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| ||||| ||||| || |||| Sbjct 316860 CATACAAAAGGAATCCACCCTTCA 316883 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| ||||| | Sbjct 300239 ATGCAGATCTTTGTTAAGACTCTGACGGGCAAGACCATCACCCTCGAGGTCGAAAGCTCA 300298 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||||| ||||| || || || || || ||||| Sbjct 300299 GACACTATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGATCAG 300358 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| |||||||||||||||| | | | ||| |||||| Sbjct 300359 CAGAGGTTGATCTTTGCCGGTAAGCAACTCGAAGATGGTCGCACTTTGGCCGACTATAAC 300418 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || ||| |||| || ||| Sbjct 300419 ATCCAAAAGGAGTCCACACTTCACTTGGTG 300448 >seq2326 Length=95029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || | ||||| || | ||||| | || || ||| | Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||| ||| || |||||||| || || || || || Sbjct 85073 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 85132 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| ||||| | || || || || || ||||||| ||| | | | || || |||| Sbjct 85133 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGA-CTTTGGCTGACTATA 85191 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| ||||| ||||| ||||||| || Sbjct 85192 ACATTCAGAAAGAGTCTACTCTTCATTTGGT 85222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || ||||| | ||||| | ||||| ||| Sbjct 84558 ATGCAGATTTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 84617 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || || ||| ||||||||||| || || || ||||| Sbjct 84618 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 84677 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || || ||||| || || |||| | ||| | |||||| ||| Sbjct 84678 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 84737 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || ||||||||| Sbjct 84738 ATTCAGAAGGAATCTACA 84755 >seq5462 Length=105758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| |||||| | || ||| | || || ||| | Sbjct 91930 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 91989 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 91990 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGGAC 92049 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| || || | || ||| || || | || || | | | | || ||||||| Sbjct 92050 CAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATTAT 92109 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || ||||| || ||||| || | ||| | ||||| || Sbjct 92110 AATATTCAGAAGGAATCGACTCTGCATCTGGTGTTGAG 92147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 |||| || ||||| | || || ||||| | || || || | || ||| | || || | Sbjct 6314 CAAAAAAGATGCAGATCTTCGTGAAAACTCTGACCGGCAAGACCATCACCTTGGAGGTGG 6373 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || | |||||||||||| | || || ||||| ||||| |||||||| |||| Sbjct 6374 AGAGCTCCGACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 6433 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 ||||||| ||| || |||| | || ||| ||||| | ||||| | | | | || || Sbjct 6434 CCGATCAGCAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCGCCG 6493 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCA 24193 | || || ||||| ||||| || || |||| Sbjct 6494 ACTACAATATTCAGAAAGAGTCCACTCTTCA 6524 >seq5335 Length=19063 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | || || | ||||| ||| Sbjct 8426 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATAACTCTTGAAGTTGAGAGTTCT 8367 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || ||| |||||||||||||| || || ||||| Sbjct 8366 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 8307 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || ||||||||||| |||| | ||| | |||||||||| Sbjct 8306 CAGAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGAACTTTGGCCGATTATAAC 8247 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || || |||||| Sbjct 8246 ATTCAGAAGGAGTCTACA 8229 >seq8531 Length=99579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| | || ||| |||| |||||| | |||||||||||| | ||||| Sbjct 91407 ACGGGAAAGACCATCACCCTCGAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCC 91348 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| |||||||| || || || || ||||| || || | || ||| ||| Sbjct 91347 AAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGAGGCTCATCTTCGCCGGAAAG 91288 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 || ||||| || | | | | | || ||| || ||||| || || || || || Sbjct 91287 CAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCAC 91235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429725588784180