Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2332 95.1 1e-14 seq2326 95.1 1e-14 seq762 95.1 1e-14 seq5462 91.5 1e-13 seq5335 86.0 5e-12 >seq2332 Length=86198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || || || || || || ||||| | || ||| | Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || || ||||||| ||||||||||| | || || | Sbjct 74518 TGATACTATTG-ACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 74576 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || || || | || || ||||| | ||||||| || || |||| || |||| Sbjct 74577 AACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATA 74636 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| |||||||||||| | ||| |||| | || | || ||||||| Sbjct 74637 ACATTCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGGAA 74687 >seq2326 Length=95029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || || || || || || ||||| | || ||| | Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || || ||||||| ||||||||||| | || || | Sbjct 85073 TGATACTATTG-ACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 85131 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || || || | || || ||||| | ||||||| || || |||| || |||| Sbjct 85132 AACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATA 85191 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| |||||||||||| | ||| |||| | || | || ||||||| Sbjct 85192 ACATTCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGCGGAGGAA 85242 >seq762 Length=331234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || || |||||||| || | || ||| | Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | || ||| || || || ||||| || |||| || || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || |||| ||| ||||| || || ||||||| | ||| | || ||||| || Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 300873 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| ||||| || | || ||||| || ||||||| ||||||| Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGAA 300923 >seq5462 Length=105758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || || || ||||| || || ||||||||||| ||| | || |||| Sbjct 91929 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 91988 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | |||||| | | |||| || || || || || || |||||| | ||| | Sbjct 91989 CTCCGACACCATCG-ACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGG 92047 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 | ||||| || || || | || || ||||| ||||| || | ||| | ||||||| Sbjct 92048 ACCAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATT 92107 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| ||||| || || || ||| | ||| |||||||||| | || ||||| Sbjct 92108 ATAATATTCAGAAGGAATCGACTCTGCATCTGGTGTTGAGGCTCCGTGGAGG 92159 >seq5335 Length=19063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || || ||||| || | ||| ||| Sbjct 8426 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATAACTCTTGAAGTTGAGAGTTCT 8367 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | || || |||||| || ||||||||| | ||| |||||| Sbjct 8366 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 8307 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || || ||| | || |||| | ||| |||||||||||||| Sbjct 8306 CAGAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGAACTTTGGCCGATTATAAC 8247 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| Sbjct 8246 ATTCAGAAGGAGTCTAC 8230 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || ||||| || || || ||||| |||| ||| | Sbjct 7971 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACTATTACTCTCGAGGTTGAGAGCTC 7912 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| |||| || ||| ||||||| ||||| ||||| | || || | Sbjct 7911 TGATACAATTG-ACAACGTCAAAGCAAAAATTCAGGATAAGGAAGGTATTCCACCGGACC 7853 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || ||||| | || || ||||| | || || | || || |||| || |||| Sbjct 7852 AACAGAGGCTTATATTCGCTGGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATA 7793 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | || || |||||||||||| | ||| |||| | || | || ||||| Sbjct 7792 ATATCCAGAAAGAGTCTACTCTTCATTTGGTTCTAAGGCTTCGTGGAGG 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425135836114720